Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g02272 ATGGACGGACGAGCAGCTCAGTACAATCCTCGGACAGTGGAAGAGGTTTTTAGGGATTTCAAGGGCCGAAGAGCTGGAATCATCAAAGCCCTCACTACCGATGTTGAAGACTTCTATAACCAATGTGATCCTGAAAAGGAGAATTTGTGCTTGTATGGATTTCCTAGTGAGCAGTGGGAAGTAAATTTGCCTGCAGAAGAAGTCCCTCCTGAGCTTCCTGAGCCTGTGCTGGGTATTAACTTTGCCAGGGATGGCATGGAAGAAAAGGACTGGTTATCATTAGTTGCTGTCCATAGTGATGCATGGTTACTTGCCATTGCCTTCTACTTTGGGGCCAGATTTGGGTTTGATAAAGCTGATAGGAAACGCCTATTCAATATGATTAATGAACTAcctacaatatttgaaattgttaCTGGtacagaaaagaaacaagttaAGGAGAAGGCTTCGGTTTCAAATCACAGCAGCAGCAAATCTAAGTCTAACTCCAAAGCTCGGGCTTCAGAACCTCAGGGAAGAACAAAGGTGATGCAACCAAAAGACGAGGATGATGGACAGGTTGgggaagatgaagatgagcATGGAGACACCTTATGCGGGGCTTGCGGGGAGAATTATGGTAATGATGAATTCTGGATTTGTTGTGACGTCTGCGAAAAGTGGTTCCACGGCAAGTGTGTGAAGATCACGCCAGCTAGGGCAGAGCATATCAAGCAATATAAGTGCCCATCATGCACTAACAAGAGGGCTCGCCCCTG 761 0.431 MDGRAAQYNPRTVEEVFRDFKGRRAGIIKALTTDVEDFYNQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPVLGINFARDGMEEKDWLSLVAVHSDAWLLAIAFYFGARFGFDKADRKRLFNMINELPTIFEIVTGTEKKQVKEKASVSNHSSSKSKSNSKARASEPQGRTKVMQPKDEDDGQVGEDEDEHGDTLCGACGENYGNDEFWICCDVCEKWFHGKCVKITPARAEHIKQYKCPSCTNKRARP 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g02272 253 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 5 253 - -
Bva02g02272 253 PANTHER CPG BINDING PROTEIN 5 253 IPR045104 GO:0006355|GO:0042393
Bva02g02272 253 MobiDBLite consensus disorder prediction 151 170 - -
Bva02g02272 253 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 189 248 IPR013083 -
Bva02g02272 253 ProSiteProfiles Zinc finger PHD-type profile. 197 249 IPR019787 -
Bva02g02272 253 SUPERFAMILY FYVE/PHD zinc finger 189 250 IPR011011 -
Bva02g02272 253 MobiDBLite consensus disorder prediction 146 193 - -
Bva02g02272 253 Pfam Alfin 12 139 IPR021998 GO:0006355|GO:0042393
Bva02g02272 253 SMART PHD_3 199 247 IPR001965 -
Bva02g02272 253 CDD PHD_AL_plant 199 249 IPR044104 -
Bva02g02272 253 ProSitePatterns Zinc finger PHD-type signature. 200 246 IPR019786 -
Bva02g02272 253 Pfam PHD-finger 200 249 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva02g02272 Bva-Chr2 22587157 22591294 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva02g02272 1 252 Alfin-like Transcription Factor Family AT3G42790 73.810 8.33e-128 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Bva02g02272 Alfin 4.3e-69 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva02g02272 - - csin:114296613 442.195