Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g02258 ATGGGAAATCAGAAGCAGAAGTGGACGGCGGAGGAAGAAGACGCCTTGCTCGCCGGAGTTGCAAAGCATGGTCCCGGCAAGTGGAAGAATATCCTCAAAGATCCCGAATTTGCTCCTTTCCTCACCACCCGTTCAAACATCGACCTCAAGGATAAATGGCGAAATTTAAGTGTTAGTACTGCTGCTCAAGGctctaaagaaaaatcaaggaatCCCAAGATTAAAGCAATAGCAGCTGCTGCTCCAGCTCCCAATGCACAGCATGCTAGTCCTGCTGCTCCAGCTCGTCAAAGTGCAGCTTCTGATGCGATAATGGAGGATGCTTCTCAAAGTGCACAGGATGTCAAACTTGCTCCACGATATAATGCAATGGTTTTTGAAGCTCTGACAGCAATAAAAGATGCTAATGGATCTGATGTAAATGCCATTCTTAGTTTCATTGAGCAAAATCATGAGGTtcctcaaaatttcaaaagggCATTAAGTACAAGATTGAGGAGGCTTGTTGCTCAAGGCAAACTTGAGAAGGTACAAAATTGTTACAAGTTACCAAAGGATTCCCCAGCCGTAACAAAAACACCTGCACCAAAACAAAAGGAGGTCTGGCCCCGACAATCCCCAGCCTCTAGTTTAGTGCCGCCTAATGAGACAGTAAAGGAAGCTGCTGAAGCTGCAGCCTATAGAGTTGCTGAAGCTGAAAACAAATCGTTTTTGGCCGCTGAGGCAGTAAAGGAATTAGAAAGAATCTCGAAATTGGCTGAAGATACTGACTCAATGTTGCAGCTAGCGAAAGAGATATATGAACAATGTTCGCGTGGTGAAATCATCCTCTTGGCTTA 839 0.4315 MGNQKQKWTAEEEDALLAGVAKHGPGKWKNILKDPEFAPFLTTRSNIDLKDKWRNLSVSTAAQGSKEKSRNPKIKAIAAAAPAPNAQHASPAAPARQSAASDAIMEDASQSAQDVKLAPRYNAMVFEALTAIKDANGSDVNAILSFIEQNHEVPQNFKRALSTRLRRLVAQGKLEKVQNCYKLPKDSPAVTKTPAPKQKEVWPRQSPASSLVPPNETVKEAAEAAAYRVAEAENKSFLAAEAVKELERISKLAEDTDSMLQLAKEIYEQCSRGEIILLA 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g02258 279 MobiDBLite consensus disorder prediction 185 216 - -
Bva02g02258 279 Gene3D - 2 58 - -
Bva02g02258 279 PANTHER SINGLE MYB HISTONE 4 1 278 IPR044597 GO:0003691
Bva02g02258 279 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
Bva02g02258 279 Gene3D - 115 200 IPR036388 -
Bva02g02258 279 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Bva02g02258 279 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 117 185 IPR005818 GO:0000786|GO:0003677|GO:0006334
Bva02g02258 279 CDD H15 119 197 IPR005818 GO:0000786|GO:0003677|GO:0006334
Bva02g02258 279 PANTHER TELOMERE REPEAT-BINDING FACTOR 4-RELATED 1 278 - -
Bva02g02258 279 Coils Coil 215 235 - -
Bva02g02258 279 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Bva02g02258 279 SUPERFAMILY "Winged helix" DNA-binding domain 119 197 IPR036390 -
Bva02g02258 279 SMART sant 4 59 IPR001005 -
Bva02g02258 279 Pfam linker histone H1 and H5 family 119 178 IPR005818 GO:0000786|GO:0003677|GO:0006334
Bva02g02258 279 MobiDBLite consensus disorder prediction 80 107 - -
Bva02g02258 279 SUPERFAMILY Homeodomain-like 2 58 IPR009057 -
Bva02g02258 279 SMART h15plus2 115 180 IPR005818 GO:0000786|GO:0003677|GO:0006334
Bva02g02258 279 CDD SANT_TRF 6 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva02g02258 Bva-Chr2 22486121 22489998 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva02g02258 1 278 Single Myb Histone (SMH) Gene Family AT1G17520 53.448 9.75e-91 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Bva02g02258 Linker_histone 1.3e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva02g02258 K09422 - tcc:18596170 369.777