Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g02238 ATGGCGACCCAAATGAGCAAAAAGCGAAAGTTCGTAGCCGATGGAGTTTTCTTTGCGGAGCTCAATGAGGTTCTGACCAGAGAGCTCGCAGAGGATGGGTATTCTGGGGTTGAAGTTAGGGTTACGCCAATGCGAACTGAGATCATCATAAGGGCGACTCGTACCCAAAATGTTCTCGGTGAGAAAGGAAGGAGAATAAGGGAACTGACATCAGTTGTTCAGAAGCGTTTTAAATTCCCAGAAAATAGCGTTGAGCTGTATGCTGAGAAAGTCAACAACAGAGGGCTCTGTGCTATTGCTCAGGCAGAGTCTCTGCGTTACAAGCTTCTTGGAGGACTAGCTGTCAGGAGGGCTTGCTATGGTGTTCTAAGGTTTGTTATGGAAAGTGGAGCAAAAGGTTGTGAGGTTATTGTTAGTGGCAAGCTCAGGGCTCAGCGTGCCAAGTCTATGAAGTTCAAGGATGGGTACATGATATCATCTGGTCAGCCTGTTAAGGAATATATTGACTCTGCTGTGAGGCATGTGCTTCTGAGACAGGGTGTTCTTGGGATCAAGGTGAAAATTATGCTTGACTGGGATCCTAAGGGTAAGCAAGGTCCAACTAAGCCGCTGCCTGATGTGGTCACTATCCATCCAccaaaggaggaagaagattaCACCGTCAGACCCTTGCAACAGCCCCCTGGCAATATAGAGATTCCGGTGGTTTA 710 0.4634 MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKEYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPTKPLPDVVTIHPPKEEEDYTVRPLQQPPGNIEIPVV 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g02238 236 Pfam KH domain 20 93 IPR004044 GO:0003723
Bva02g02238 236 PANTHER 40S RIBOSOMAL PROTEIN S3-RELATED 3 232 - -
Bva02g02238 236 CDD 40S_S3_KH 15 95 - -
Bva02g02238 236 Gene3D - 93 220 IPR036419 -
Bva02g02238 236 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 10 99 IPR009019 GO:0003723
Bva02g02238 236 ProSiteProfiles Type-2 KH domain profile. 21 92 IPR004044 GO:0003723
Bva02g02238 236 Pfam Ribosomal protein S3, C-terminal domain 106 188 IPR001351 GO:0003735|GO:0006412
Bva02g02238 236 Gene3D - 1 91 IPR015946 -
Bva02g02238 236 SUPERFAMILY Ribosomal protein S3 C-terminal domain 93 191 IPR036419 -
Bva02g02238 236 ProSitePatterns Ribosomal protein S3 signature. 147 183 IPR018280 -
Bva02g02238 236 MobiDBLite consensus disorder prediction 217 236 - -
Bva02g02238 236 TIGRFAM uS3_euk_arch: ribosomal protein uS3 8 210 IPR005703 GO:0003735|GO:0006412|GO:0015935
Bva02g02238 236 PANTHER 30S/40S RIBOSOMAL PROTEIN S3 3 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva02g02238 Bva-Chr2 22393090 22395528 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva02g02238 1 225 Cytoplasmic Ribosomal Protein Gene Family AT5G35530 90.222 2.69e-150 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva02g02238 K02985 - mnt:21409977 432.565
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g02096 08 13874144 13876807 Bva02g02238 02 22393090 22395528 ECH
Bva06g00548 06 5859827 5862102 Bva02g02238 02 22393090 22395528 ECH
Bva05g01095 05 5615540 5618216 Bva02g02238 02 22393090 22395528 ECH
Bva02g02238 02 22393090 22395528 Bva02g02238 02 22393090 22395528 ECH