Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g02229 ATGGCCACAGTGACTGATGAATCAAGTCAGAGAAAAGTGAAGGCCCCGACAACAAGAAGCATGCCTGTGAACAAGGGAGCTTGGACACCAGAGGAAGACAGGAAACTTGCTGAGGTTATTGCTGTCCATGGGGCACGAAGGTGGAAATCTATTGCAGACAAAGCAGGGCTTAATCGCTGCGGTAAGAGTTGTAGGCTAAGATGGTTGAATTATCTGAGACCCAACATAAAGAGAGGCAACATATCAGACGAAGAAGAGGATTTGATACTTAGGCTTCACAAGCTTCTGGGAAACAGGTGGTCTTTGATTGCTGCAAGATTACCGGGTCGAACAGATAATGAGATAAAGAACTACTGGAATTCACATTTGAGTAAGAAAACGAAGCAGCAGGAGAGAAAAAGTGGGAATTCAGCAAGAAAAATTAGCAAATCTctggaaaagaaagaggcGGAGGAGACTCCTCAAGAACAGAGTAGAGAGAAGGAATCAGCTCGAGTTGTTGAAGATCCAAAGTTCAGGTGCAATGGGAAtgatttctttgatttcttgGAAGAAGAAGGCCCTTTGAATCTAGAGTGGGTAAGCAAATTTCTTGAATTAGATTA 605 0.4099 MATVTDESSQRKVKAPTTRSMPVNKGAWTPEEDRKLAEVIAVHGARRWKSIADKAGLNRCGKSCRLRWLNYLRPNIKRGNISDEEEDLILRLHKLLGNRWSLIAARLPGRTDNEIKNYWNSHLSKKTKQQERKSGNSARKISKSLEKKEAEETPQEQSREKESARVVEDPKFRCNGNDFFDFLEEEGPLNLEWVSKFLELD 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g02229 201 SMART sant 77 125 IPR001005 -
Bva02g02229 201 SMART sant 24 74 IPR001005 -
Bva02g02229 201 Pfam Myb-like DNA-binding domain 78 123 IPR001005 -
Bva02g02229 201 Pfam Myb-like DNA-binding domain 25 72 IPR001005 -
Bva02g02229 201 CDD SANT 27 72 IPR001005 -
Bva02g02229 201 PANTHER TRANSCRIPTION FACTOR WER-LIKE ISOFORM X1 10 201 - -
Bva02g02229 201 MobiDBLite consensus disorder prediction 123 169 - -
Bva02g02229 201 SUPERFAMILY Homeodomain-like 22 119 IPR009057 -
Bva02g02229 201 Gene3D - 25 77 - -
Bva02g02229 201 Gene3D - 81 168 - -
Bva02g02229 201 MobiDBLite consensus disorder prediction 1 27 - -
Bva02g02229 201 MobiDBLite consensus disorder prediction 1 17 - -
Bva02g02229 201 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 77 127 IPR017930 -
Bva02g02229 201 CDD SANT 82 123 IPR001005 -
Bva02g02229 201 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 20 76 IPR017930 -
Bva02g02229 201 ProSiteProfiles Myb-like domain profile. 73 123 IPR001005 -
Bva02g02229 201 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 10 201 - -
Bva02g02229 201 ProSiteProfiles Myb-like domain profile. 20 72 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva02g02229 Bva-Chr2 22358461 22359525 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva02g02229 25 126 MYB Transcription Factor Family AT5G40330 69.608 4.09e-52 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Bva02g02229 Myb_DNA-binding 8.4e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva02g02229 K09422 - qsu:112020715 262.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g02090 08 13849230 13851251 Bva02g02229 02 22358461 22359525 ECH
Bva02g02229 02 22358461 22359525 Bva02g02229 02 22358461 22359525 ECH