Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g02222 ATGGGGTCTCACGAGCAAGCCCTAGTTTCCCTTCTTAACCAGGTAGCTCTATCCTTTGACGGTGCCGTTTTGGGGGTGGCGTTAGCCTACGTCGCCGTCCGCTCTGTCCTCAAATTCACTTTCAATTCCACCGCTCTCGATAAGCTCCGCAAAGCCCCTTCTATCTCTGTTTCGGACCTTCGATCACTACTCGGTGATTCCGAAACTGAAGGCAATTCCGAAAATTCTCAACTTGTAGTTGTCCGGGGCACTGTCGAGGCCAAGCCCGTGGTTGATAGCAGCTGCAAGAGCTTCAGACCTAGCATCTTAGTTTCTCGAGAGTCAGGCGACAAAGCTGTGGTTGTTCAAAGAACTCAAACGtgtatatataatgaatgGAAGGGCTTCTTGGGATGGACGTCTGATCTTCGAgccatattttcaaaatcttggAGGCAACAGGAATCTCCATCATTCAGAACgGTGCCTTTTGTTCTAATTGATGGTAGACTACGGACACATGCCGATTATGTtgttgtcaacttggatggcTCAAGACATCCCTTACCTCTCACAACAGTTTATCATAAATTGCAACCCATAAATGCATCTCCTTACACATTCTTGCAGGCACTGTTTGGTCATGAATATCCAGTTGGACTActggatgaagaaaaaattcttcCTTTAGGAAAGGAAATCAACGCTGTAGGCCTCTGCAGTTTTAGAGATGGAATAGCTGAGATTAAATCAAGCAAAGATCTACCATATTTTTTGACTGACCTGAGTAAAGATCAGATGATTGTAGATCTTGccttcaaaacaaatatactGTTTTGGGCTGGTATTCTCTTTGGTTCGATGTCAGTTGCCATTCTTGGTTATGCTGCCGTGAGGAACTGGAATAAGTGGAAAGAGTGCAGGCAACGGAGGCAGCTCCGGCAGCGAAACCAAGATGTCAGTAATGATGCTGATTCTCAGGCTGTAGTTGATGATGAGCCTGAAGAGGTTCCTGATGGACAATTATGCGTTATATGCCTCATGAGGAGAAGGCGCTCAGTTTTTATTCCCTGTGGACATCTTGTGTGCTGCCAAGGGTGTGCCATATCGGTTGAGCACGAAGTGACCCCTAAATGTCCCGTTTGTAGGCAGGAAATTCGGAATGCAGTGCGGATATTTGAATCTTG 1166 0.4288 MGSHEQALVSLLNQVALSFDGAVLGVALAYVAVRSVLKFTFNSTALDKLRKAPSISVSDLRSLLGDSETEGNSENSQLVVVRGTVEAKPVVDSSCKSFRPSILVSRESGDKAVVVQRTQTCIYNEWKGFLGWTSDLRAIFSKSWRQQESPSFRTVPFVLIDGRLRTHADYVVVNLDGSRHPLPLTTVYHKLQPINASPYTFLQALFGHEYPVGLLDEEKILPLGKEINAVGLCSFRDGIAEIKSSKDLPYFLTDLSKDQMIVDLAFKTNILFWAGILFGSMSVAILGYAAVRNWNKWKECRQRRQLRQRNQDVSNDADSQAVVDDEPEEVPDGQLCVICLMRRRRSVFIPCGHLVCCQGCAISVEHEVTPKCPVCRQEIRNAVRIFES 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g02222 388 Pfam E3 Ubiquitin ligase 139 285 IPR022170 GO:0004842|GO:0006996|GO:0016567
Bva02g02222 388 Pfam Zinc finger, C3HC4 type (RING finger) 334 381 - -
Bva02g02222 388 ProSiteProfiles Zinc finger RING-type profile. 336 376 IPR001841 -
Bva02g02222 388 SUPERFAMILY RING/U-box 330 381 - -
Bva02g02222 388 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 310 387 IPR013083 -
Bva02g02222 388 SMART ring_2 336 375 IPR001841 -
Bva02g02222 388 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SPL2 1 388 - -
Bva02g02222 388 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SPL2 1 388 IPR044247 GO:0004842
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva02g02222 Bva-Chr2 22333268 22336934 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva02g02222 328 385 C3H Transcription Factor Family AT3G06140 36.207 3.17e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva02g02222 K15688 - gmx:100811939 566.614
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva02g02222 02 22333268 22336934 Bva02g02222 02 22333268 22336934 ECH