Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g02200 atgtCTAACCTCCCGGACACGACGGTGGCGGATGGCCGGAGGCCCGGAAAATCGGCGGAGAGGTCCAATTTTTCACTGACTTGCAACCTCGTGAGCCAGTTCCTGAAGGAGAAACGAAGCTCTGGAGGTCTCAGCCTTGGAATTGCAGGGAAAATGGAATCCGGAGGAACTTCGAAGAACTTGCTAACAAGCTTAGGAAATTCGGAAGCAGCTATAGAATTTCTTCCACAATTTGTGGAAAACCCCTGCATTAAGCAGTCTGATAACAGGTCGCGAGATCCCTCCGGAGCCTCCCAATTAACGTTATTCTATGCCGGAAAAGTGTTAGTATTTGATGCCTTTCCGGCGGAGAAGGCGACGGAGATCATGGAGTTGGCCACCAAATTGTGCTCTGATAGTTCTGAAACAAAACAGAAACCCCCTAGTGCATCTGTTGCTACTGAAAATGTGAACGCTGTGAAAGAGCCTCAAATAAACACCGACCAAGAAGTCCCTCGACCAGGAACCCAATCTATTGGTTCAGATATGAGATACCCTAGGAGAGCATCACTTCTAAAATTCCttgagaagagaaaggaaagGGTCATGGCTAAAGGACCTTACCATTTTAATAACCCAATGAGAGTTGGTCCTTCCAAGCATGGGGAAAACAGTTCAGAAGATGACCATGGAGATCAGTCCGGCAAACAGTTTGACCTCAATTTGTA 707 0.4597 MSNLPDTTVADGRRPGKSAERSNFSLTCNLVSQFLKEKRSSGGLSLGIAGKMESGGTSKNLLTSLGNSEAAIEFLPQFVENPCIKQSDNRSRDPSGASQLTLFYAGKVLVFDAFPAEKATEIMELATKLCSDSSETKQKPPSASVATENVNAVKEPQINTDQEVPRPGTQSIGSDMRYPRRASLLKFLEKRKERVMAKGPYHFNNPMRVGPSKHGENSSEDDHGDQSGKQFDLNL 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g02200 235 MobiDBLite consensus disorder prediction 196 235 - -
Bva02g02200 235 MobiDBLite consensus disorder prediction 132 175 - -
Bva02g02200 235 PANTHER JASMONATE ZIM-DOMAIN PROTEIN 10 218 - -
Bva02g02200 235 MobiDBLite consensus disorder prediction 214 228 - -
Bva02g02200 235 MobiDBLite consensus disorder prediction 1 20 - -
Bva02g02200 235 SMART tify_2 93 128 IPR010399 -
Bva02g02200 235 Pfam Jas motif 180 201 IPR018467 -
Bva02g02200 235 ProSiteProfiles Tify domain profile. 93 128 IPR010399 -
Bva02g02200 235 MobiDBLite consensus disorder prediction 132 169 - -
Bva02g02200 235 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 10 218 IPR040390 -
Bva02g02200 235 Pfam tify domain 95 126 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva02g02200 Bva-Chr2 22213868 22215822 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva02g02200 18 208 Tify Gene Family AT1G19180 33.188 4.45e-25 97.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Bva02g02200 tify 5.9e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva02g02200 K13464 - gmx:100778559 259.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva02g02200 02 22213868 22215822 Bva02g02200 02 22213868 22215822 ECH