Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g02199 ATGCAGAATCACAGGCtaaagcagcagcagcaagcTTTGATGCAACAAGCTCTTCTTCAGCAACAATCTCTCTACCACCCTGGCCTCTTAGCTCCTCCTCAGATTGAGCCAATTCCAAGTGGAAATCTGCCTCCTGGTTTTGATCCAAGTACTTGCCGCAGTGTGTATGTGGGGAACATCCATACACAGGTGACTGAGCCACTTCTGCAAGAAGTTTTTTCAAATGCTGGCCCTGTCGAAGGATGCAAAGTTATTAGAAAGGAGAagTCATCGTATGGATTTGTTCACTATTTTGATCGCAGATCTGCTGCTCTTGCCATATTGACTCTTAATGGAAGGCATTTGTTTGGGCAGCCTATCAAAGTTAACTGGGCATATGCTAGTGGTCAGAGAGAGGATACATCAGGTCATTACAACATATTTGTTGGTGATCTTAGTCCAGAGGTTACTGATGCTACGCTGTTTGCATGCTTTTCTGTTTATCCCAGTTGTTCAGATGCAAGGGTAATGTGGGATCAGAAAACTGGCCGATCAAGGGGTTTTGGATTTGTTTCCTTTCGTAATCAACAGGATGCTCAAAGCTCGATAAATGATTTGACTGGTAAGTGGCTCGGTAGTAGACAAATACGTTGTAACTGGGCAACAAAGGGTGCTGGTGCTAATGAAGACAAACAAAACTCAGACACCAAGAGTGTGGTTGAACTAACAAACGGCTCATCTGAAGATGGTAAAGAGACAACTAACAGTGATGCTCCTGAGAACAATCCTCAATACACTACTGTCTATGTGGGCAATCTTGCTCCAGAGGTAACCCAGCTCGATCTGCATCGCCACTTCCATGCGCTTGGAGCTGGTGTAATTGAGGAGGTCCGTGTCCAACGTGATAAGGGGTTTGGTTTTGTGAGGTACAGTTCTCATGCTGAAGCAGCTCTGGCTATCCAGCTCGGGAATACCCAGTCTATCCTCTGTGGCAAGCAAATTAAGTGCTCCTGGGGGAGCAAGCCCACTCCACCTGGAACTGCTTCAAATCCACTTCCACCACCTGCTGCTGCACCTCTTCCAACTCTCTCTGCAACAGATCTTTTGGCCTATGAACGGCAGCTTGCAATGAGCAAGATGGGCGGGGTCCATGCCCTGATGCATCCCCAAGGGCAGCATTCTCTAAAACAAGCGGCAATTGGAGCGAGCCAAATATATGATGGTGGCTTCCAGAATGTTGCTGCTGCACAACAACTGATGTATTACCAGTA 1250 0.46 MQNHRLKQQQQALMQQALLQQQSLYHPGLLAPPQIEPIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSNAGPVEGCKVIRKEKSSYGFVHYFDRRSAALAILTLNGRHLFGQPIKVNWAYASGQREDTSGHYNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSSINDLTGKWLGSRQIRCNWATKGAGANEDKQNSDTKSVVELTNGSSEDGKETTNSDAPENNPQYTTVYVGNLAPEVTQLDLHRHFHALGAGVIEEVRVQRDKGFGFVRYSSHAEAALAIQLGNTQSILCGKQIKCSWGSKPTPPGTASNPLPPPAAAPLPTLSATDLLAYERQLAMSKMGGVHALMHPQGQHSLKQAAIGASQIYDGGFQNVAAAQQLMYYQ 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g02199 416 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 259 334 IPR000504 GO:0003723
Bva02g02199 416 SUPERFAMILY RNA-binding domain, RBD 132 218 IPR035979 GO:0003676
Bva02g02199 416 MobiDBLite consensus disorder prediction 218 257 - -
Bva02g02199 416 CDD RRM3_TIA1_like 259 334 - -
Bva02g02199 416 Gene3D - 136 236 IPR012677 -
Bva02g02199 416 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 261 321 IPR000504 GO:0003723
Bva02g02199 416 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 55 121 IPR000504 GO:0003723
Bva02g02199 416 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 140 210 IPR000504 GO:0003723
Bva02g02199 416 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 2 398 - -
Bva02g02199 416 Gene3D - 237 338 IPR012677 -
Bva02g02199 416 SUPERFAMILY RNA-binding domain, RBD 37 131 IPR035979 GO:0003676
Bva02g02199 416 SMART rrm1_1 260 330 IPR000504 GO:0003723
Bva02g02199 416 SMART rrm1_1 54 123 IPR000504 GO:0003723
Bva02g02199 416 SMART rrm1_1 139 212 IPR000504 GO:0003723
Bva02g02199 416 PANTHER OLIGOURIDYLATE-BINDING PROTEIN 1B-LIKE ISOFORM X1 2 398 - -
Bva02g02199 416 MobiDBLite consensus disorder prediction 219 257 - -
Bva02g02199 416 CDD RRM1_TIA1_like 55 125 - -
Bva02g02199 416 CDD RRM2_PUB1 139 213 - -
Bva02g02199 416 SUPERFAMILY RNA-binding domain, RBD 250 341 IPR035979 GO:0003676
Bva02g02199 416 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 138 216 IPR000504 GO:0003723
Bva02g02199 416 Gene3D - 1 135 IPR012677 -
Bva02g02199 416 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 53 127 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva02g02199 Bva-Chr2 22206315 22212392 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva02g02199 48 335 Eukaryotic Initiation Factors Gene Family AT4G34110 29.703 2.02e-23 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva02g02199 K13201 - gmx:100781227 764.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva02g02199 02 22206315 22212392 Bva02g02199 02 22206315 22212392 ECH