Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g02194 ATGGCTGCCTCAGATCAAGAATCGTCAAAAGGTTTCCCCTTTGAAGCTTTTGAAATTTACAGTGAAACTGAAGGATCTGATCCTGATTCTGGTTGGGATGATTCGAAAAGTGACCCGGGTTATGACATTCTGGAAGAAACCGATAGCAAGGTCTCGGCTCTCTCAATCGACAAGAAGGCCAATAGAAGTTCTGTTGACAGCAAAATTATCGGTTATGATAGAGAACTAGAAGAGATGGACTTGACTGCACCAGGTCTTGATGAGGaagatgagaaaaattttgaGCAAGTCCAGAAAATCATCAAAGCGGGCCTGCTAGAGAAgttgaaaattaatcaatgcAAGCTGTATTTGAGAAAGTATGGTCTGCGATTGACAGGAAAGAAGGACGCGCTCATTCAGCGCATAAAGGAGCATTTGGaGATCATAAATGGTGGAGCAGAGCAGAAGTACCCGGCTTCTAGCTTTGTATTGAATTGTAAAGGTGATGCATGCACTGGTgatgttgttttatttgagCAGAATGTTTATGAAATGTTCAACATCGCATCCAGGGGTGGCGGTGCTACTTCATGTGGCAAAAGAATTGTAGCAGGCCGTATAGTGAGAGAAAGCTATGGTGCCGCCAAGCAACAACATACATTTACGATTGAAGTACTATGGAGCAAGGGAGAGAAACCCCTCCCTCCACTTCATCCCTTATTGATTAAAGGTCGAAACCTTTATCGGTTAAAGACAATGAGACAGAGATGGGATGATGAAGGGGAAAGGCACAAAATATTGGAAGAAAAACACTCAAGGGGATCTCTTGCTAGGGAAAGTAGAGAAGTAAGGATGCAAGAAAAGGAGAACAGGAGGTTGATCATGGAAAATAGGGTCTCCAAAAGGCAGTCACGTGGGAAACATTCTCAGTCACATTCAAGCATTGCAAAATCACAGTATAAACATCAAGAATCAAATGTACATATTAATTCAGTGATGCCAGCGTTTCCCTCTCAAAATTCTGGTTTATCTGTTAACATGAGTAGTTCAACATCTCAAGTTCAACTGTTTGGTTCATATGCTGGCACCGAAAAATCCAGAGTCATATCTCAATGGTGTGGTATGCCTCCTGATTCTATAAAAGTGGCCATGGAGCCTCAGCTATTGGGAAGATCCATTGATTTCGGAAAACCTTCATTTCCTGGTCAACTGTCagatttttcctttgaaagGGTAGAAGTTGCAAGAAAACCCCATCAGCAAAAATCTTACCCTGGACCTAATACTAATAGTCTGCAAACTTCTCTGGACCAATTTGGACATAGAAAGCCTTATGATACCGCTCATGCATGGAGAGATGAACATAGTGCAGACTACAGATGGCCTAACACGCATTCAATTGCGAAACAAGCTCCTATTGAGAAATATCCCGGCGTTGTTGACAAAACCTGGTTTACAGAGAAGACGACCAATCAAAGGCAACCATTGACAAACGTAAATCATTTCCTTCCATTGGTACACCAGAGAAAAAGCTACAAGCAAAATCAGTTATGCAGACATTTCGTTAAAGGGAGGTGCTCTTTCGGGGAAAGCTGCAAGTTTTCGCATGATTTGAGAGAAAGTAGTACACATCAATA 1619 0.4058 MAASDQESSKGFPFEAFEIYSETEGSDPDSGWDDSKSDPGYDILEETDSKVSALSIDKKANRSSVDSKIIGYDRELEEMDLTAPGLDEEDEKNFEQVQKIIKAGLLEKLKINQCKLYLRKYGLRLTGKKDALIQRIKEHLEIINGGAEQKYPASSFVLNCKGDACTGDVVLFEQNVYEMFNIASRGGGATSCGKRIVAGRIVRESYGAAKQQHTFTIEVLWSKGEKPLPPLHPLLIKGRNLYRLKTMRQRWDDEGERHKILEEKHSRGSLARESREVRMQEKENRRLIMENRVSKRQSRGKHSQSHSSIAKSQYKHQESNVHINSVMPAFPSQNSGLSVNMSSSTSQVQLFGSYAGTEKSRVISQWCGMPPDSIKVAMEPQLLGRSIDFGKPSFPGQLSDFSFERVEVARKPHQQKSYPGPNTNSLQTSLDQFGHRKPYDTAHAWRDEHSADYRWPNTHSIAKQAPIEKYPGVVDKTWFTEKTTNQRQPLTNVNHFLPLVHQRKSYKQNQLCRHFVKGRCSFGESCKFSHDLRESSTHQ 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g02194 539 Coils Coil 270 290 - -
Bva02g02194 539 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEI 22 534 IPR045124 GO:0003723|GO:0045892
Bva02g02194 539 MobiDBLite consensus disorder prediction 29 43 - -
Bva02g02194 539 Gene3D SAP domain 90 153 IPR036361 -
Bva02g02194 539 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 62-LIKE 22 534 - -
Bva02g02194 539 MobiDBLite consensus disorder prediction 1 43 - -
Bva02g02194 539 ProSiteProfiles Zinc finger C3H1-type profile. 506 533 IPR000571 GO:0046872
Bva02g02194 539 SUPERFAMILY SAP domain 95 141 IPR036361 -
Bva02g02194 539 SUPERFAMILY CCCH zinc finger 507 531 IPR036855 GO:0046872
Bva02g02194 539 SMART sap_9 106 140 IPR003034 -
Bva02g02194 539 Pfam CCCH-type zinc finger 511 531 IPR041367 -
Bva02g02194 539 Pfam SAP domain 106 140 IPR003034 -
Bva02g02194 539 ProSiteProfiles SAP motif profile. 106 140 IPR003034 -
Bva02g02194 539 SMART c3hfinal6 507 532 IPR000571 GO:0046872
Bva02g02194 539 MobiDBLite consensus disorder prediction 262 297 - -
Bva02g02194 539 Gene3D - 499 539 - -
Bva02g02194 539 MobiDBLite consensus disorder prediction 262 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva02g02194 Bva-Chr2 22173901 22177811 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Bva02g02194 SAP 5.8e-09 CL0306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva02g02194 - - gmx:100815642 483.411
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva02g02194 02 22173901 22177811 Bva02g02194 02 22173901 22177811 ECH