Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g02178 ATGAGCAAGATAAAGCAAATCTTCTCCACAACATTAGATTCAGGCAACCACATTTCCATGAGCAGCAAAAACAAGAAGCTCCTTGTAGCTCTATTCGCTGCTTTGCTTCTTGTGGCTGCCATTATTGGCGTTGTCGTCCACAACAACTCTAACTCCAACCACAATGTCGTTTCCTCCCAATCACACGCCATAATCAGAAGCTCTTGCAGCATCACATTGTACCCAGAATTGTGCTTCTCTGTCATTACCTCTGAACATCATGCCAACCACAAAGTGTCCAGCCAAAGAGATGTCATAGAGTTGTCCATAAACATCACAATCGGAGCCGTGCAGCACAATTACTTGACCGTAAAAAAGCTCTTAGCCAAAAAGGGCCTCACTAAAAGAGAACAAACTGCTCTCCACGATTGCTTGGAGACCACTGACGAGACCCACGACGAGCTTCATAAGACCCTGAAAGATCTCAAAGAGTACCCGACCAAGAAGTCATTGAACAAACACGCAGACGACCTCGAGACTCTGATCAGCGCCGCCATTACCAACCAAGTCACTTGCTTGGATGGCTTCTATGACGATGACAATAAGGAAATCAGGGGAGCTCTGCAAGATGGGCAAGTTCACGTGGAGCAGATGTGCAGCAACGCATTGGCTATGATCAAGAACATGACAGATACTGACATTGCCAATTACGAGAGGGAAAGGGGAATCGCAAGCAGGAAGCTGGTGGAGAAGAAGCAGGGGATTCGGTGGCCAGAGTGGATGTCGGCGGGAGATAGGCGGCTGCTTCAGGCGGAGACGGTGGAGGCCGATATGGTGGTGGCGGCAGACGGCAGTGGAAATTTTACCACAGTGTCGGAGGCCGTGGAAGCTGCTCCCAAGAACAGCGAGAagagatttattattaaaataaaagcaggGGTGTACCGAGAAAACGTGGATGTGCCTAAGAAGAAGACAAATATTATGTTCTTGggagaaggaagaaacaaTACCATTATCACCGCACACAGAAATTATGTCGATGGAAGCACAACCTTTCACTCAGCCACAGTCGCTGCTGTGGGTGAAGGATTCCTAGCCAGGGACATAACCTTCCAAAACACAGCAGGTCCCTCAAAGCACCAAGCGGTGGCACTTCGTGTCGGTGCTGACTTCGCAGCCTTCTACCGCTGTGACATTCTTGCATACCAAGACACACTCTATGTCCATAGCAATCGCCAATACTTCGTGGAGTGCCTCATTGCAGGCACGGTGGATTTCATATTCGGCAATGCAGCTGCTGTATTCCAAGACTGTGACATCCACGCTCGGCGTCCCGGTGAAGGCCAAAAGAACATGGTCACGGCACAGGGGCGTGTTGACCCTAACCAGAACACTGGCATTGTTATTCAAAAAAGTAGAATTGGTGCAACGAGGGATTTGGAGCCTGTCAAGGGAAGCTACCCTACCTACCTTGGCAGGCCATGGAAGCAGTTCTCTCGGACTGTGATCATGCAATCAATTATAAGTGATGTGATTGACCCTGTTGGTTGGCATGTGTGGAATGACAGCAGTTTTGGCTTGAATACTTCGTTTTATCGGGAGTATAAGAACACTGGCCCTGGTGCTGACACCTCTGCCAGGGTTACTTGGGAGGGTTTTGAGGTGATTACTAATGCTACTGAGGCTTTGCCTTTTACTGTTGACCATTTCATTGCGGCTTCAACCTGGTTGAACTCTACTGGATTTCCATTCTCTGTTGGactcta 1748 0.476 MSKIKQIFSTTLDSGNHISMSSKNKKLLVALFAALLLVAAIIGVVVHNNSNSNHNVVSSQSHAIIRSSCSITLYPELCFSVITSEHHANHKVSSQRDVIELSINITIGAVQHNYLTVKKLLAKKGLTKREQTALHDCLETTDETHDELHKTLKDLKEYPTKKSLNKHADDLETLISAAITNQVTCLDGFYDDDNKEIRGALQDGQVHVEQMCSNALAMIKNMTDTDIANYERERGIASRKLVEKKQGIRWPEWMSAGDRRLLQAETVEADMVVAADGSGNFTTVSEAVEAAPKNSEKRFIIKIKAGVYRENVDVPKKKTNIMFLGEGRNNTIITAHRNYVDGSTTFHSATVAAVGEGFLARDITFQNTAGPSKHQAVALRVGADFAAFYRCDILAYQDTLYVHSNRQYFVECLIAGTVDFIFGNAAAVFQDCDIHARRPGEGQKNMVTAQGRVDPNQNTGIVIQKSRIGATRDLEPVKGSYPTYLGRPWKQFSRTVIMQSIISDVIDPVGWHVWNDSSFGLNTSFYREYKNTGPGADTSARVTWEGFEVITNATEALPFTVDHFIAASTWLNSTGFPFSVGL 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g02178 582 SUPERFAMILY Pectin lyase-like 266 581 IPR011050 -
Bva02g02178 582 CDD PMEI-like_3 67 223 - -
Bva02g02178 582 ProSitePatterns Pectinesterase signature 2. 414 423 IPR033131 -
Bva02g02178 582 TIGRFAM PME_inhib: pectinesterase inhibitor domain 36 222 IPR006501 GO:0004857
Bva02g02178 582 PANTHER PECTINESTERASE 22 581 - -
Bva02g02178 582 Pfam Pectinesterase 270 567 IPR000070 GO:0030599|GO:0042545
Bva02g02178 582 SMART PMEI_2 60 218 IPR006501 GO:0004857
Bva02g02178 582 PANTHER PECTINESTERASE 22 581 - -
Bva02g02178 582 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 64 223 IPR035513 -
Bva02g02178 582 Gene3D - 264 582 IPR012334 -
Bva02g02178 582 Pfam Plant invertase/pectin methylesterase inhibitor 64 218 IPR006501 GO:0004857
Bva02g02178 582 Gene3D Invertase/pectin methylesterase inhibitor family protein 60 223 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva02g02178 Bva-Chr2 22090460 22093986 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva02g02178 23 582 Carbohydrate Esterase AT3G14310 67.069 0.0 763
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva02g02178 K01051 - tcc:18596314 788.875