Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g02164 ATGATGGGAACTTCCTCGACCTCTGCTAACGGTCTCTTTGTTGATGAGTTGTACTTTTCAGCCCTTTACGATAGTGAAGTGTTATTTCCAATCTCCGATGAGAAATATGCAGAAGAGCTACAACTCCAAGAAGCTCTAATATCCTCGGCTATGTCcactaaaatgaaaagtgaAGTCACCCGCAACGTAAATGAAGAATGTGATACTTACCCTTTTaaggggaagaaaaaagagactGGTGAGTCTTCTCGATCTTGTTCTCAAAGCTTCTGTCAAATTTGTACGGAAGATAAACCAGCTGAAGAAATGTTCAGAAACCAGAACTGCGCTCATTCGTTCTGCACTGATTGTGTTGGAAGATACGTGGGAGCAAAGATTCAGGAAAACATATCATCCGTTAAATGCCCTGAACCAAAATGTAGAGGTGTTATAGAGCCTCAGTTTTGTCGTTCAATTATTCCAAAGGAGGTGTTTGATCGATGGGAAGATGCTCTCTCTGAGAATTTGGTACTGGGATCACAGAAATTTTATTGTCCTTTTAATGATTGCTCTGCTTTGTTAGTGGATGATGGAGGTGAAGTTGTGACTTCTTCAGAGTGTCCAAATTGCAGACGGTTGTTCTGTGCACAATGCAGGGTGCCGTGGCATGCAGGAGTTGATTGCAGGGAGTTTCAGAACATGAAAGAGAGTGGTCTCGTGAGAGAAGATTTAATGGTAATGGAGCtagcaaagaagaagaaatggacaAGGTGCCCTAACTGCAAATTTTACGTGGAAAAGGTTGATGGATGCAACCACATTTCTTGCAGAGGATCGATGATGGCAACTTCTTCATCAGCCTCTGATAATGATCTCTTTGCTGATGAATTCTACTTGTCAGCCCTTTATGATGagaaaaacaagGAGACAGCTGTTGAGTCTTCTCAATCTTTGCCAGCTCGAAGCTTCTGTGAAATTTGCCTGGAAGATAAACCAGCTGAAGAAATGCTTACAAACCAGAACTGCGCTCACTCATTCTGCACTGATTGCATTAGAAGATACGTGGGAGCAAAGATTCAGGAAAACATATCATTTGTTAAATGCCCTGAACCTAAGTGCAGAGGTGTTCTAGAGCCTCAGTTTTGTCAATCAGTCATTCCAAAGGAGGTGTTTGATCGATGGGAAGATGCTCTTTGCGAGAATTTGGTGCTAGCATCACAAAAATTTTACTGTCCTTCCAAGGATTGCTTGGCTTTGTTGGTTGCCGATGGAGATGAAGTCGTGACTTCTTCAGAGTGTCCAAATTGCAGGCTGTTGTTCTGTGCACAGTGCAGGGTGCCATGGCATGCCCGAAATGGATTGCAGGGAGTTTCAGAACATGAAAGAGAGTGGTCTCGTGAGAGAAGATTTAATGGTAATGGAGCTAGCAAAGAATA 1415 0.4085 MMGTSSTSANGLFVDELYFSALYDSEVLFPISDEKYAEELQLQEALISSAMSTKMKSEVTRNVNEECDTYPFKGKKKETGESSRSCSQSFCQICTEDKPAEEMFRNQNCAHSFCTDCVGRYVGAKIQENISSVKCPEPKCRGVIEPQFCRSIIPKEVFDRWEDALSENLVLGSQKFYCPFNDCSALLVDDGGEVVTSSECPNCRRLFCAQCRVPWHAGVDCREFQNMKESGLVREDLMVMELAKKKKWTRCPNCKFYVEKVDGCNHISCRGSMMATSSSASDNDLFADEFYLSALYDEKNKETAVESSQSLPARSFCEICLEDKPAEEMLTNQNCAHSFCTDCIRRYVGAKIQENISFVKCPEPKCRGVLEPQFCQSVIPKEVFDRWEDALCENLVLASQKFYCPSKDCLALLVADGDEVVTSSECPNCRLLFCAQCRVPWHARNGLQGVSEHEREWSRERRFNGNGASKE 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g02164 471 SUPERFAMILY RING/U-box 316 394 - -
Bva02g02164 471 SMART ring_2 317 366 IPR001841 -
Bva02g02164 471 SMART ring_2 91 140 IPR001841 -
Bva02g02164 471 SMART ibrneu5 385 444 IPR002867 -
Bva02g02164 471 SMART ibrneu5 159 221 IPR002867 -
Bva02g02164 471 SUPERFAMILY RING/U-box 165 226 - -
Bva02g02164 471 SUPERFAMILY RING/U-box 389 443 - -
Bva02g02164 471 SUPERFAMILY RING/U-box 88 168 - -
Bva02g02164 471 ProSiteProfiles Zinc finger RING-type profile. 317 365 IPR001841 -
Bva02g02164 471 ProSitePatterns Zinc finger RING-type signature. 109 118 IPR017907 -
Bva02g02164 471 ProSiteProfiles TRIAD supradomain profile. 313 471 IPR044066 -
Bva02g02164 471 ProSiteProfiles TRIAD supradomain profile. 87 302 IPR044066 -
Bva02g02164 471 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 310 444 IPR031127 GO:0004842|GO:0016567
Bva02g02164 471 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 63 275 IPR031127 GO:0004842|GO:0016567
Bva02g02164 471 SUPERFAMILY RING/U-box 235 269 - -
Bva02g02164 471 Pfam RING-type zinc-finger 91 136 IPR027370 -
Bva02g02164 471 Pfam RING-type zinc-finger 317 362 IPR027370 -
Bva02g02164 471 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 312 399 IPR013083 -
Bva02g02164 471 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 84 172 IPR013083 -
Bva02g02164 471 ProSitePatterns Zinc finger RING-type signature. 335 344 IPR017907 -
Bva02g02164 471 Pfam IBR domain, a half RING-finger domain 386 443 IPR002867 -
Bva02g02164 471 Pfam IBR domain, a half RING-finger domain 164 221 IPR002867 -
Bva02g02164 471 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 310 444 - -
Bva02g02164 471 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 63 275 - -
Bva02g02164 471 ProSiteProfiles Zinc finger RING-type profile. 91 139 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva02g02164 Bva-Chr2 22035950 22039157 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva02g02164 317 444 C3H Transcription Factor Family AT2G19610 24.638 4.25e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva02g02164 K11975 - eus:EUTSA_v10021980mg 390.578