Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g02162 ATGATGTTTCATCCTCAAGGAGCTTTGAAACAAACTTGTAGTCTCCTTGCTGTCACCTCTGACAAAAGCTTCGAGCATGAACTTGAGAAGAAGTTCCAACACAATCAACCGAAGTATCCTTTTCCTGAATTAACTTCCTCAGGACGTCTGGAGGTCCAAACTCTAAACAATCCTGAAAAGGAGCAATTCCAGAAATTTCTTGATTCTTATCAGCCAAACTTTGTATACTTACAAGGAGAACAGCTTGCAAGTGGTGAAGTCGGCTCACTGGTTTGGCGAGGTGTGGAGCTATCCTCCTCTGAAGCTATATCAGAGCTCTTTGGACAAACATTGCCAACAGCTGTTTATTTGGAAATTCCAAATGGAGAAGCTTTGGCAGAGGTTCTTCACGCAAAGGGAATCCCATATGTGATATATTGGAAGAATGCCTTCTCATGTTATGCTGCTTGCCATTTTCGCCAAGCATTTCTTTCAGTAGTGCAGAGTTCATCTACTCATACGTGGGACGCATTCCACCTTGCCCGTGCTTCTTTTCAGCTTTATTGTGTTCGAAACAATCATGCCCTTCCTGCTGAGAGCCATGATGCTAGTAATGAGATGGGGCCACACCTTCTTGGTAACTGTCTGAAGGTCAATGTTGAGCCTCCTGAGATATGTGCAGATGATGAAGAAAGTTCCTTGGACAGTCTTCCTGCTATAAAGATACATGATGATGAAGTGAGCTTGAGATTTCTTGTCTGTGGTGCACTTCCCATCATGgaTGAGTCACTATTGAGATCTTTGGAGGATGGACTCAGGGCACTTTTAACCATCGAAaTACGCGGGAGCAAGCTCCATGGCAAGTTTAGTGCCCCCCCACCACCTCTTCAGGCGGGCACATTTTCTCGTGGAGTTGTGACTATGCGATGTGATATGTCAACCTGTACTTCTGCCCATATCTCACTTCTGGTGTCTGGTAGTGCACAGACTTGCTTTAATGATCAGctttTGGAGAATCATATTAAAAGTGAGATAATTGAGAACAGTCAACTAGTTCATGCACAACTCAATGATGGAAACAAACAGCCTGTGTCTGAACCTCGGAGATCTACCTCAATAGCCTGTGGGTCAAGGGTCTTTGAAGTTTGCATGAAGCTTCCTCAGTGGGCTTTGCAGGTCTTGAGACAACTAGCACCTGATACTTCTTATCGAAGTTTAGTTGCACTTGGCATTGCTAGCATTCAGGGGTTGCCTGTTGCTTCATTTGAGAAAGACGATGCTGAGCgtctacttttcttttatgaaaacTGCGAGAAAGATAGCTCTGCCAACAATACCATTGTCAGCAGTATCCCTGGTTGGTTGAAACCACCACCTCCTACTAGAAAGAGGTGTGAGCCAAGCCGAGAGGAAAACCCCGATCTCAATGATGCAGTTCAAGAGGAAAAGGATACAAAAATGGTGAATGGGATTAGCATGCCATTAACTCCAGCCAGGCAGAGACTAAAAGTATCTGCTATGAGGCCCATTCCTCATGTTCGTCGCCACAGAATGACACCCTTTTCTGGACCTTCTGAGTCAAATGGTTATGACGGTGCCCAAGTGGAGGCACATTTACCTATTGTTGTTCCCACAAAACGCAGTAGTATCGGATCATCTTCTGCAACACAGCGAAAATCATTTTCAGGCTCATCTCAATCTAAGCAAGTCATTTCCTTGAACCCGTTGCCTTTGAAGAAACATGGATGTAGCAGAGGCTCAATACAGACTTGTTCCGAGGAGGAATTCCTGAAAGATGTTATGGAATTTCTAATTATTCGGGGGCATAATCGACTTATACCTCAAGGTGGTCTTGCTGAGTTCCCTGATGCAATACTCAATGGGAAACGCCTTGACCTTTACAACTTGTATAAAGAGGTGGTTACGAGGGGAGGATTTCACGTTGGCAATGGCATCAACTGGAAAGGGCAGATCTTCTCAAAGATGCGCAATTATACAACCACCAATAGAATGACTGGGGTTGGAAATACACTCAAAAGACATTATGAAACCTACCTTCTAGAATATGAACTGGCACATGATGATGTTGATGGAGAGTGCTGCTTGTTGTGTCACAGTAGTGCAGCTGGAGACTGGGTTAATTGTGGCATATGCGGCGAGTGGGCCCACTTCGGTTGCGACAGAAGGCAAGGTCTTGGTGCTTTTAAGGATTATGCAAAGACAGATGGGCTAGAATACATATGCCCTCATTGTAGCATTACAAATTTCAAGAAGAAACCACAAGGAATTGCAAATGGGTATTCCCAGGGGTCAATGGCATCTAGACCCCTTTA 2312 0.4407 MMFHPQGALKQTCSLLAVTSDKSFEHELEKKFQHNQPKYPFPELTSSGRLEVQTLNNPEKEQFQKFLDSYQPNFVYLQGEQLASGEVGSLVWRGVELSSSEAISELFGQTLPTAVYLEIPNGEALAEVLHAKGIPYVIYWKNAFSCYAACHFRQAFLSVVQSSSTHTWDAFHLARASFQLYCVRNNHALPAESHDASNEMGPHLLGNCLKVNVEPPEICADDEESSLDSLPAIKIHDDEVSLRFLVCGALPIMDESLLRSLEDGLRALLTIEIRGSKLHGKFSAPPPPLQAGTFSRGVVTMRCDMSTCTSAHISLLVSGSAQTCFNDQLLENHIKSEIIENSQLVHAQLNDGNKQPVSEPRRSTSIACGSRVFEVCMKLPQWALQVLRQLAPDTSYRSLVALGIASIQGLPVASFEKDDAERLLFFYENCEKDSSANNTIVSSIPGWLKPPPPTRKRCEPSREENPDLNDAVQEEKDTKMVNGISMPLTPARQRLKVSAMRPIPHVRRHRMTPFSGPSESNGYDGAQVEAHLPIVVPTKRSSIGSSSATQRKSFSGSSQSKQVISLNPLPLKKHGCSRGSIQTCSEEEFLKDVMEFLIIRGHNRLIPQGGLAEFPDAILNGKRLDLYNLYKEVVTRGGFHVGNGINWKGQIFSKMRNYTTTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYICPHCSITNFKKKPQGIANGYSQGSMASRPL 770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g02162 770 SMART ARID_2 580 683 - -
Bva02g02162 770 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 4 760 IPR042293 -
Bva02g02162 770 CDD ARID 585 683 - -
Bva02g02162 770 MobiDBLite consensus disorder prediction 455 474 - -
Bva02g02162 770 Gene3D - 578 686 IPR036431 GO:0003677
Bva02g02162 770 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 687 749 IPR013083 -
Bva02g02162 770 SMART bright_3 584 688 IPR001606 GO:0003677
Bva02g02162 770 ProSiteProfiles ARID domain profile. 583 687 IPR001606 GO:0003677
Bva02g02162 770 MobiDBLite consensus disorder prediction 540 561 - -
Bva02g02162 770 SUPERFAMILY ARID-like 583 698 IPR036431 GO:0003677
Bva02g02162 770 Pfam ARID/BRIGHT DNA binding domain 586 683 IPR001606 GO:0003677
Bva02g02162 770 SUPERFAMILY FYVE/PHD zinc finger 686 751 IPR011011 -
Bva02g02162 770 CDD PHD_ARID4_like 693 744 - -
Bva02g02162 770 MobiDBLite consensus disorder prediction 443 474 - -
Bva02g02162 770 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 4 760 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva02g02162 Bva-Chr2 22022271 22030634 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva02g02162 2 759 ARID Transcription Factor Family AT3G43240 62.730 0.0 961
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Bva02g02162 ARID 3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva02g02162 - - gmx:100816540 1307.74