Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g02146 ATGATTATCatcaccttcttcttcttcttcacggCCATTTTTGCCACGTATTTGCTGCAAAAACACATCAAATGGCGGCATTATAATTATGGTGGTCAAGCTGCTGCTGGTTTTGAAGAAGATGGAGAGATGACTGAGAAGTATGGAGGTGATTTTTGTGCAGTGTGTCTAAGCCAAATCTGCGATGGAGAAGAGATTAAAACACTAGCGGTATGCAAGCATAGTTTCCATGTTGATTGTGTTGATGCCTGGTTGAAGAATCATAGCACATGCCCTCTCTGTAGGAACAATAACGATCTCAATCAAGGGCATAATAACTTGGGAGACGCCTCCTCTGATCTTCTCcagaaattttcttctctagtTTCAATATTTTGCTGCATAGCATTTCAACCCAAAATTATGTGGGATTTCAACACTTTTCACCATTATGTCTTGTG 440 0.3636 MIIITFFFFFTAIFATYLLQKHIKWRHYNYGGQAAAGFEEDGEMTEKYGGDFCAVCLSQICDGEEIKTLAVCKHSFHVDCVDAWLKNHSTCPLCRNNNDLNQGHNNLGDASSDLLQKFSSLVSIFCCIAFQPKIMWDFNTFHHYVL 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g02146 146 Pfam Ring finger domain 53 95 IPR001841 -
Bva02g02146 146 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 27 99 IPR013083 -
Bva02g02146 146 ProSiteProfiles Zinc finger RING-type profile. 53 95 IPR001841 -
Bva02g02146 146 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 49 103 IPR044675 -
Bva02g02146 146 SUPERFAMILY RING/U-box 46 103 - -
Bva02g02146 146 PANTHER RING-H2 FINGER PROTEIN ATL3 49 103 - -
Bva02g02146 146 SMART ring_2 53 94 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva02g02146 Bva-Chr2 21952160 21952669 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva02g02146 53 96 C3H Transcription Factor Family AT1G53820 61.364 3.26e-16 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva02g02146 - K19038 gmx:100500375 104.76