Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g02128 atGGATGGTGAGAATAAGCTTCCCGGGGCTGTTGAGGATAACCCCTCCTACTGGTTTGATGCCTGTGAGGATATTTCCTGTGAccttattgattttgatactGGGGCTGTTGTACCAGAACAGATTGATCACAATTTGAACCAGGAAGGACTGACCTGTGATTTCTTTGGTGGAATTGATCAATATCTGGATAGTTTTAAGAATGGTAGCGATCTACCTGTAGTTGCTCAGAGCAATTCTATCCTTGCTGAGAATGGGGAGACAGAACTGGCAGTAGATGACTGTGTGTTACAATCTGAAAGTTTGATGGCCCAGTCCAATGCGGGCCATGAGGATAGTTTTGAGAAGAAGGGATTGGTTGGCCAGAAACGTGGTCGTTCTGGTGAAGTTTGTGAGAAGTCAGAAGTAGAGAGCAATGGATTTAAGTTATCAAATggggggagaaaagaaaatggaggcCAGAGAAAAGAGAATGGGGGTGGTGATCTATCAAGGGAAGATGATGTggatgatgaagaaagaggCAGCCAAAGGGCTCGGCTTGGGAACTATAAGAATGAGAGGCATTGTTCTGGGAGAGTGAATTATCATCCCAAGGAGAGGGAGAGAGGCCCTAGTAGGAAGAGGTCACGAGACTGGGATGACAATGATAAGAGGGAGAAAGATAATCTGTGGAAAAGAGAACATTATAATGGTTCTAATAAAAGAGATGCTAGAGATAGAGATTGGAGGGACAGAGAATCCAGGGGTTACTGGGAAAGGGTTAAACCAGGTTCTAATGAGATGGTCTTTCGCTTGGGCACTTGGGAAGTTGATCGTAATCGAGAAGGAAAGATGGCAAACGACACAAAACAAGAATGTGATGGAAGGGTTGAGAAGAAATCTGAGGAGTCCAAGGATAGAGTGCCTGAGGAGCAAGCTAGACAGTATCAGTTGGATGTTCTTGAGcaggcaaagaagaaaaatactatAGCTTTTCTTGAAACTGGAGCAGGGAAGACTCTAATTGCTGTTCTTCTTATGAAAAGTATTCATGAGAATTTGCTAAAGCAGAATAAGAAAATGCTTGCAGTATTTTTGGTTCCAAAGGTTCCGCTTGTTTATCAGcAAGCAGAAGTAATTCGTGAGCGGACTGGTTACCAGGTGGGCCATTACTGTGGAGAAATGGGGCAGGATTTCTGGGATGCTCGAAGGTGGCAGCGTGAATTTGAGGCGAAACATGTTCTAGTCATGACAgctcaaattcttttaaacatTCTGAGGCACAGcataataaaaatggaagCAATCAATCTCCTTATTATGGATGAGTGCCATCATGCTGTGAAGAAACACCCATATTCACTAGTGATGTCTGAGTTCTATCATACAACACCCAAAGAGAAGAGACCATCTGTATTTGGAATGACTGCTTCTCCTGTTAATTTGAAAGGTGTCTCCAGCCAAGTAGATTGTGCAATAAAAATTCGTAATCTTGAAAGTAAGCTAGATTCTATAGTTTCTACCATTAAAGATCGTAAGGAGCTGGAGAAACACGTGCCAATGCCTTCTGAAATTGTGGTGGAGTATGACAAAGCAACTAGTTTATATTATCTTCATGAGCAGATAAAGCGAATGgaagttgaagttgaagaagcTGCGAAATCAAGTTCAAGAAGAAGTAAATGGCAGTTTATGGGAGCTAGAGATGCTGGGGCCAAAGAAGAGCTACGCCAAGTGTATGGTGTTTCTGAAAGAACAGAAAGTGATGGAGCTGCAAACTTAATTCAGAAGTTGAGAGCTATTAATTATGCTCTTGGTGAACTGGGTCAGTGGTGTGCATACAAGGTTTCACATTCCTTTCTAACAGCTTTACAAAATGATGAGAGGGCAAACTATCAACTCGATGTCAAGTTTCAAGAATCCTATCTAAAAAAAGTTGTCTCTCTTTTGCAATGCCAACTGTCAGAGGGTGCTGCTTCTGACAAGAATGGTGGAGTTGCTGACTCAAAGGGTGGTGTGACTCTCGATAGCTCTGCACCCGATGACATTGAGGAGGGAGAGCTTCCAGACAGTCATGTTGTCTCTGGTGGGGAGCATGTGGATGTCATAATAGGAGCAGCTGTGGCTGATGGCAAGGTTACCCCCAAGGTGCAGGCATTAATCAAAATACTTCTGAAGTATCAGCATACTGAAGACTTCCGTGCCATCATCTTTGTTGAGCGTGTTGTGTCTGCTTTAGTTCTACCTAAGGTCTTTGCAGAGCTCCCATCTCTGAGTTTTGTGAAGTGTGCAAGCCTGATTGGTCACAATAATAGTCAGGAAATGCGGACCTGCCAAATGCAGGATACAATTTCTAAGTTTCGTGATGGACGAGTCACATTGTTAGTTGCTACTAGTGTTGCTGAGGAAGGTCTTGATATCCGGCAGTGTAATGTTGTTATCCGCTTTGACCTTGCAAAGACTGTTTTGGCATACATTCAGTCCAGGGGCCGTGCCAGAAAGCCTGGGTCAGATTACATCCTGATGGTAGAGAGGGGAAATCTGTCACATGAAGCATTTCTAAGAAATGCCAGGAATAGTGAGGAAACCTTGCGGAGAGAAGCAATACAGAGAACTGACTTAAGTAATCTTAAAGATACTTCAAGGTTGATTTCAGTTGATACTAGGCCGGGAACAGTTTACCAGGTGGAGTCAACTGGTGCAGTCGTGAGCTTAAATTCTGCTGTAGGTCTTATCCACTTCTATTGCTCACAGCTACCTAGTGACAGATATTCAATTCTTCGTCCCGAGTTCATCATGGAGAAGCATGAAAAACCAGGATGTCCTATTGAATATTCTTGCAAGCTTCAACTGCCGTGTAATGCTCCATTTGAAATTCTTCAGGGTCCTATCTGCAGTTCAATGCGCCTTGCACAACAGGCTGTTTGTCTGGATGCTTGCAAGAAACTGCATGAGATGGGAGCATTTACTGACATGCTATTGCCTGACAAAGGAAGTGgggaagacaaagaaaaagctgAGCAAAATGATGAAGGAGATCCACTTCCAGGAACTGCTAGACATAGAGAATTCTATCCTGAAGGTGTGGCGGACATTCTAAAGGGAGAATGGATCTTATCTGCAAAGGATGCCTGCAAGGATTCCAAAAAGCTTCATCTTTATATGTATGCTGTTAAGTGTGTAAATGTGGGCCATTCTAAGGATTCATTCTTGACTCAAGTTTCAGATTTTGCAGTACTTTTTGGCAATGAGCTGGATGCAGAGGTGTTATCGATGTCCATGGATCTATTTATCGCTCGAACCATGACTACAAAGGCATCTCTTGTCTTTAGAGGGTCAATAGATATCACTGAGAGTCAgTTGGCATCCCTCAAAAGTTTTCATGTAAGATTAATGAGCATTGTCTTGGATGTGGATGTTGAGCCGTCTACCACTCCTTGGGATCCTGCAAAAGCATATTTGTTTGTCCCAATGGTTAGCGATAAGTCTTTAGATCCTGTGAACCAAGTTGACTGGGATCTGGTTGAGACAATAATTGGAGCTGATGCATGGAGCAATCCGCTTCAAAGAGCTCGACCAGATGTTTACCTTGGTACAAATGAGAGAACATTAGGTGGAGATAGAAGAGAGTATGGATTTGGGAAATTGCGTCATGGCATGGCTTTTGGGCAAAAATCACATCCAACCTATGGAATCAGAGGAGCTGTGGCACAGTTTGATGTGGTGAAAGCTTCGGGATTGGTTCCCAATCGTAATGCCATGCAAATGGAAAAGAATATGAGTTTTActaccaaagaaaaattgataatggCAGATACTTGTACTAATGCAGAGGATCTGGTAGGGAGAGTTGTAACAGCTGCACACTCTGGGAAAAGGTTTTATGTTGATTCAATATGCAAAGATATGACAGCGGAGAATTCTTtcccaagaaaagaaaattatcttgGTCCTCTGGAGTACAGCTCATATGCTGATTACTACAAGCAAAAGTATGGAGTTGATTTGATTTACAAGCAGCAACCTCTTATAAGAGGACGTGGCGTATCATATTGCAAGAATCTTCTTTCCCCTCGATTTGAACACAGTGAAGAACATGAAGGTGAATCCGAAGAGAATCATGACAAAACTTATTATGTGTTTCTTCCTCCTGAGTTGTGCCTTGTACACCCATTGCCTGGATCACTTGTTCGTGGCGCTCAGAGGTTGCCCTCGATAATGAGGAGGGTTGAAAGTATGCTACTTGCTGTTCAGCTTAAGAGTATGATAAACTATCCTGTCCAGGCTTCAAAGATCTTGGAGGCATTGACTGCTGCCTCATGCCAGGAGACATTCTGCTATGAAAGAGCAGAGCTTCTAGGAGATGCTTACCTGAAATGGGTTGTTAGCCGATTTCTTTTCCTAAAATACCCACAGAAACACGAAGGCCAGCTTACTAGGATGAGGCAACAAATGGTCAGTAATATGGTATTATATCAGTATGCATTATCTAAAGGACTCCAATCATATATCCAAGCAGACCGCTTTGCTCCGTCCAGATGGGCAGCTCCTGGGGTGCTGCCTGTCTTTGATGAGGATACCAAGGAAGGAGAATCAACTTTATTTGATCAGGATGGATTAATGTCTAAGACTGGGAGGATGGGCTTACCTGATGATGAATATGAAGACGATGAAATGGAGGATGGTGAGCTTGAGAGTGACTCAAGTTCATATAGGGTCCTATCCAGCAAGACACTTGCAGATGTTGTAGAAGCACTGATTGGAGTATATTATGTTGAAGGAGGGAAGAATGCCGCTAACCACCTTATGAAATGGATTGGCATTCAGGTAGAGTTTGATCCTGATGAGATGGAGTGCACAAGAAAGCTGTGCAATGTTCCAGAGAGCATACTCAAAAGTGTTGACTTCAATGCCTTAGAAGGTGCTTTGAATATAAAGTTTAATGACAGAGGTCTGCTGGTAGAAGCCATAACTCATGCCTCCAGACCATCTTCAGGCGTATCTTGTTATCAGCGGTTAGAGTTTGTTGGTGATGCTGTTTTGGATCATCTCATTACCAGGCACTTGTTCTTCACTTACACAGATCTGCCTCCTGGACGTTTGACTGACCTCCGGGCTGCAGCTGTgaacaatgaaaattttgcacGTGTTGCAGTCAAACACAATCTTCATGTCCATCTTCGGCATGGGTCCAGTGCCCTAGAAAAACAGATTAGAGAGTTTGTTAAGGAAGTTCAAGAGGAATTGTTGAAGCCAGGATTTAACTCCTTTGGTTTGGGAGACTGCAAAGCTCCCAAGGTCCTTGGCGACATTGTTGAGTCTGTTGCTGGTGCCATTTTTCTTGACAGTGGGCGGGACACCGGTGTTGTCTGGAAGGTTTTTCAGCCTCTTTTGCATCCTATGGTCACCCCGGAGACATTGCCAATGCATCCTGTACGTGAGTTGCAAGAGCGATGCCAGCAGCAGGCTGAAGGCTTAGAATATAAAGCAAGTCGAGTTGGCAATTTGGCTACTGTTGAAGTATTCATTGACGGCGTGCCAGTAGGTGCTGCTCAAAatccacaaaagaaaatggcacAGAAATTAGCTGCAAGAAATGCCCTTGCtgttttaaaagagaaagaagcggtaaaaactaaagagaaggatgatgaaaatgggaagaagaagaagaatggaaACCAGACATTCACTAGACAAACCTTAAACGATATCTGTTTGCGAAGAAATTGGCCTATGCCATTCTACCGATGTGTGAGTGAAGGTGGTCCTGCACATGCAAAGAGGTTTACATTTGCTGTACGCGTCAATACTACTGATAGAGGATGGACGGATGAATGCATTGGAGAGCCAATGCCAAGTGTCAAGAAGGCTAAAGACTCTGCTGCTGTTCTTCTCTTGGAATTGCTAAATAAGTTATACACATG 5909 0.4126 MDGENKLPGAVEDNPSYWFDACEDISCDLIDFDTGAVVPEQIDHNLNQEGLTCDFFGGIDQYLDSFKNGSDLPVVAQSNSILAENGETELAVDDCVLQSESLMAQSNAGHEDSFEKKGLVGQKRGRSGEVCEKSEVESNGFKLSNGGRKENGGQRKENGGGDLSREDDVDDEERGSQRARLGNYKNERHCSGRVNYHPKERERGPSRKRSRDWDDNDKREKDNLWKREHYNGSNKRDARDRDWRDRESRGYWERVKPGSNEMVFRLGTWEVDRNREGKMANDTKQECDGRVEKKSEESKDRVPEEQARQYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLMKSIHENLLKQNKKMLAVFLVPKVPLVYQQAEVIRERTGYQVGHYCGEMGQDFWDARRWQREFEAKHVLVMTAQILLNILRHSIIKMEAINLLIMDECHHAVKKHPYSLVMSEFYHTTPKEKRPSVFGMTASPVNLKGVSSQVDCAIKIRNLESKLDSIVSTIKDRKELEKHVPMPSEIVVEYDKATSLYYLHEQIKRMEVEVEEAAKSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCAYKVSHSFLTALQNDERANYQLDVKFQESYLKKVVSLLQCQLSEGAASDKNGGVADSKGGVTLDSSAPDDIEEGELPDSHVVSGGEHVDVIIGAAVADGKVTPKVQALIKILLKYQHTEDFRAIIFVERVVSALVLPKVFAELPSLSFVKCASLIGHNNSQEMRTCQMQDTISKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMVERGNLSHEAFLRNARNSEETLRREAIQRTDLSNLKDTSRLISVDTRPGTVYQVESTGAVVSLNSAVGLIHFYCSQLPSDRYSILRPEFIMEKHEKPGCPIEYSCKLQLPCNAPFEILQGPICSSMRLAQQAVCLDACKKLHEMGAFTDMLLPDKGSGEDKEKAEQNDEGDPLPGTARHREFYPEGVADILKGEWILSAKDACKDSKKLHLYMYAVKCVNVGHSKDSFLTQVSDFAVLFGNELDAEVLSMSMDLFIARTMTTKASLVFRGSIDITESQLASLKSFHVRLMSIVLDVDVEPSTTPWDPAKAYLFVPMVSDKSLDPVNQVDWDLVETIIGADAWSNPLQRARPDVYLGTNERTLGGDRREYGFGKLRHGMAFGQKSHPTYGIRGAVAQFDVVKASGLVPNRNAMQMEKNMSFTTKEKLIMADTCTNAEDLVGRVVTAAHSGKRFYVDSICKDMTAENSFPRKENYLGPLEYSSYADYYKQKYGVDLIYKQQPLIRGRGVSYCKNLLSPRFEHSEEHEGESEENHDKTYYVFLPPELCLVHPLPGSLVRGAQRLPSIMRRVESMLLAVQLKSMINYPVQASKILEALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLYQYALSKGLQSYIQADRFAPSRWAAPGVLPVFDEDTKEGESTLFDQDGLMSKTGRMGLPDDEYEDDEMEDGELESDSSSYRVLSSKTLADVVEALIGVYYVEGGKNAANHLMKWIGIQVEFDPDEMECTRKLCNVPESILKSVDFNALEGALNIKFNDRGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFTYTDLPPGRLTDLRAAAVNNENFARVAVKHNLHVHLRHGSSALEKQIREFVKEVQEELLKPGFNSFGLGDCKAPKVLGDIVESVAGAIFLDSGRDTGVVWKVFQPLLHPMVTPETLPMHPVRELQERCQQQAEGLEYKASRVGNLATVEVFIDGVPVGAAQNPQKKMAQKLAARNALAVLKEKEAVKTKEKDDENGKKKKNGNQTFTRQTLNDICLRRNWPMPFYRCVSEGGPAHAKRFTFAVRVNTTDRGWTDECIGEPMPSVKKAKDSAAVLLLELLNKLYT 1969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g02128 1969 MobiDBLite consensus disorder prediction 170 219 - -
Bva02g02128 1969 ProSiteProfiles Ribonuclease III family domain profile. 1428 1589 IPR000999 GO:0004525|GO:0006396
Bva02g02128 1969 SMART riboneu5 1424 1609 IPR000999 GO:0004525|GO:0006396
Bva02g02128 1969 SMART riboneu5 1645 1801 IPR000999 GO:0004525|GO:0006396
Bva02g02128 1969 SUPERFAMILY PAZ domain 1266 1385 IPR036085 GO:0005515
Bva02g02128 1969 CDD RIBOc 1646 1801 IPR000999 GO:0004525|GO:0006396
Bva02g02128 1969 PANTHER ENDORIBONUCLEASE DICER HOMOLOG 1 261 1967 - -
Bva02g02128 1969 Gene3D - 301 545 IPR027417 -
Bva02g02128 1969 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 902 997 IPR005034 GO:0016891
Bva02g02128 1969 Gene3D paz domain 1258 1383 - -
Bva02g02128 1969 CDD SF2_C_dicer 707 837 - -
Bva02g02128 1969 Gene3D Dicer dimerisation domain 897 1000 IPR038248 -
Bva02g02128 1969 MobiDBLite consensus disorder prediction 110 136 - -
Bva02g02128 1969 SUPERFAMILY RNase III domain-like 1629 1800 IPR036389 GO:0004525|GO:0006396
Bva02g02128 1969 SMART helicmild6 743 829 IPR001650 -
Bva02g02128 1969 Gene3D - 1897 1967 - -
Bva02g02128 1969 Gene3D - 700 866 IPR027417 -
Bva02g02128 1969 MobiDBLite consensus disorder prediction 653 683 - -
Bva02g02128 1969 SUPERFAMILY dsRNA-binding domain-like 1895 1965 - -
Bva02g02128 1969 Gene3D Ribonuclease III domain 1624 1799 IPR036389 GO:0004525|GO:0006396
Bva02g02128 1969 Gene3D Ribonuclease III domain 1406 1602 IPR036389 GO:0004525|GO:0006396
Bva02g02128 1969 CDD RIBOc 1424 1607 IPR000999 GO:0004525|GO:0006396
Bva02g02128 1969 ProSitePatterns Ribonuclease III family signature. 1665 1673 IPR000999 GO:0004525|GO:0006396
Bva02g02128 1969 Pfam Helicase conserved C-terminal domain 710 827 IPR001650 -
Bva02g02128 1969 SUPERFAMILY dsRNA-binding domain-like 1760 1876 - -
Bva02g02128 1969 Gene3D - 1802 1880 - -
Bva02g02128 1969 MobiDBLite consensus disorder prediction 276 305 - -
Bva02g02128 1969 ProSiteProfiles Ribonuclease III family domain profile. 1630 1778 IPR000999 GO:0004525|GO:0006396
Bva02g02128 1969 SMART PAZ_2_a_3 1251 1409 IPR003100 GO:0005515
Bva02g02128 1969 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1804 1867 IPR014720 -
Bva02g02128 1969 MobiDBLite consensus disorder prediction 106 219 - -
Bva02g02128 1969 MobiDBLite consensus disorder prediction 149 163 - -
Bva02g02128 1969 Pfam Ribonuclease III domain 1665 1778 IPR000999 GO:0004525|GO:0006396
Bva02g02128 1969 Pfam Ribonuclease III domain 1442 1589 IPR000999 GO:0004525|GO:0006396
Bva02g02128 1969 SUPERFAMILY RNase III domain-like 1401 1607 IPR036389 GO:0004525|GO:0006396
Bva02g02128 1969 ProSiteProfiles PAZ domain profile. 1245 1385 IPR003100 GO:0005515
Bva02g02128 1969 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 314 491 IPR014001 -
Bva02g02128 1969 MobiDBLite consensus disorder prediction 988 1015 - -
Bva02g02128 1969 MobiDBLite consensus disorder prediction 990 1015 - -
Bva02g02128 1969 CDD DEXHc_dicer 306 505 - -
Bva02g02128 1969 Pfam double strand RNA binding domain from DEAD END PROTEIN 1 1891 1964 - -
Bva02g02128 1969 Pfam Dicer dimerisation domain 902 990 - -
Bva02g02128 1969 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 354 841 IPR027417 -
Bva02g02128 1969 SMART ultradead3 303 506 IPR014001 -
Bva02g02128 1969 MobiDBLite consensus disorder prediction 1539 1561 - -
Bva02g02128 1969 PANTHER DICER-RELATED 261 1967 - -
Bva02g02128 1969 SMART DRBM_3 1805 1866 IPR014720 -
Bva02g02128 1969 SMART DRBM_3 1892 1965 IPR014720 -
Bva02g02128 1969 MobiDBLite consensus disorder prediction 1869 1889 - -
Bva02g02128 1969 CDD DSRM_DCL_plant 1897 1958 - -
Bva02g02128 1969 Pfam PAZ domain 1263 1405 IPR003100 GO:0005515
Bva02g02128 1969 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1891 1966 IPR014720 -
Bva02g02128 1969 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 714 874 IPR001650 -
Bva02g02128 1969 MobiDBLite consensus disorder prediction 1869 1886 - -
Bva02g02128 1969 Pfam Type III restriction enzyme, res subunit 311 473 IPR006935 GO:0003677|GO:0005524|GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva02g02128 Bva-Chr2 21833727 21844281 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva02g02128 726 870 Eukaryotic Initiation Factors Gene Family AT5G11200 27.703 6.85e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva02g02128 K11592 - gmx:100811631 3191.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva02g02128 02 21833727 21844281 Bva02g02128 02 21833727 21844281 ECH