Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g02116 ATGGAGGAGCTGGAGttggagaaagagaaggaggaTAAAAGCGAGAAGAAGGATGGTGGGTCTTCTGATGTAATTAGCTGGGACAAGTTTCTGCCCAGGACGGTGATTAGAGTTCTGCTTGTCGAAGCTGATGATTCTACTCGTCAAATTATCTCTGCCCTTCTCCGCAAATGCAGTTATCGAGTTGCTGCAGTTGCTGATGGATTAAAGGCGTGGGAGACGTTGAAGAGGAAAGCTCCTGATATAGATCTAATATTAACAGAAGTGGAGTTGCCATCGATATCTGGATTTGCACTTCTTACTTTAGTCATGGAGCATGACGCATGCAAAAATATCCCTGTCATAATGATGTCTTCTCAGGATTCAATTAGCATGGTGTTGAAATGCATGTTGAAAGGTGCTGCTGATTTTCTTATAAAGCCTGTTCGGAGGAATGAGCTGAGGAACTTGTGGCAGCATGTATGGAGAAGGCGGCATATTAGTGGGCATCcacaaaatataacttttccaaagaaaaaacttgAGGCCTCCTCAGAAAACAACACTGCAAGCAATCATTCTAGTGGTTCTGTGGCCTCCCcacagaaaaatgatgaatgCACTGAGAAAGGGAGTAAAGCCCAAAGCTCTTGTACATCACATTTTTTGGCAGCTGAGAGTGCATATATGCAAAATATGCAGGGTCCATCCCAGCTGAAGTACAGGAGCTATTCAAGTTTGAGCAACATTGACATAGCTAAGAATGACAAGTCTAGTAGATTGAATAGGAAACAAGTGAAGCATAACAATGACACTGGAGAAAAGTCAATTACATTTGTGTCAGAGGCTGCAACATGCAACGAACCTTTTAACTCAATAGATTTAAGACTGGAACAAGGTCATGGTTGTGCTAAAACAGAGACTCGAGTTGGGCCTTTAAGATCAGAGTTAAGTAGAGGAAATCCTAATATTGATACTGAGATGCACGGCTGCAATCTTGAACTTGAAGAACCTTCAAGAGGAGCTATTGACTTGATTGCCACACTTGGGAGTCTTCCGAAGAACATTGATGGAAACTCTGGTCTTATTGGTGGTGGCACAAACAAGTTTGATTTTGACCCACAGTTGGAGCTTTCTTTGAGAAGAGATTTTCCTAGTAGTTCATGTAAACAAGCAACTGAGGAAAGGCAAACATTGAACCATTCTAATGCATCTGCCTTTTCTTGGTATAGTGGTAGTAAGTTGTTGCGGCCCCCTTTTCCTTCACCATCAAGTTCTACTGGAGTAAAAGACACTAGGTGGAATTCCCATGTGTCCACTAAATTATCTGGAAATGACATTGACACTTCTCGGTATGGTGGAAAAAATCCTGGTCATGAGAATATGACCTCTCCGGTCGTTGGTCAGTCTGTACAAACTGAAGTACAGTTGCCAAACGGTCAACATGGATCCTTTCCTGCTAGTACAGCGGTTACTTCTGATCATATGTCTAGCGAAAATGGTCATGTTCTCCCTTCTGTGTTCTACACACAGTCCGGTGGTCATCCCATATGGAGTCCCAAACCAGtgtacaagaaagaaaattctccCCTTCCCACAAGTTCCTCTTTTCAGTCCAATCCTGAAAGTCACAACTCGGAGCAATGTTATCACTGGTCTGATGATGCCACTTATTCTTCTATTGATCAAACCGTAGATGATAAAAGCAACTTGGATTCTGTGAGGCATGATTCTCCTGCTGCTGGTAAGAATACCAGTAATAGTCTATGTCATGACACTGCAAATCATATCAATAGCAGTGCATACAGCGGAAGTGATGGAAACACTACTTCAGCGATGGTAGTTGAgaatattcatgaaaaatttagTGAAAATGGCCGTCATAATTCTGATGGACTTAGAGGTATGGACTCTCATCGCGGCAGCCAAAGAGAAGCTGCTCTAACGAAGTTCCGTCTGAAGCGGAAAGATAGATGCTTTGAAAAGAAGGTTCGATATCAAAGCCGTAAAAGACTGGCAGAGCAGCGTCCTCGGGTGAAAGGGCAATTTGTACGTCAAGTGCAGAATGATCATCCAGTTGCTAATGCTGCTGTAGGGTCTTGCTTGTCTGTGGTGGAAtctatttgttttcttgaagCTTCAGACAAAAAGAGTAGGATATG 2141 0.4068 MEELELEKEKEDKSEKKDGGSSDVISWDKFLPRTVIRVLLVEADDSTRQIISALLRKCSYRVAAVADGLKAWETLKRKAPDIDLILTEVELPSISGFALLTLVMEHDACKNIPVIMMSSQDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRRHISGHPQNITFPKKKLEASSENNTASNHSSGSVASPQKNDECTEKGSKAQSSCTSHFLAAESAYMQNMQGPSQLKYRSYSSLSNIDIAKNDKSSRLNRKQVKHNNDTGEKSITFVSEAATCNEPFNSIDLRLEQGHGCAKTETRVGPLRSELSRGNPNIDTEMHGCNLELEEPSRGAIDLIATLGSLPKNIDGNSGLIGGGTNKFDFDPQLELSLRRDFPSSSCKQATEERQTLNHSNASAFSWYSGSKLLRPPFPSPSSSTGVKDTRWNSHVSTKLSGNDIDTSRYGGKNPGHENMTSPVVGQSVQTEVQLPNGQHGSFPASTAVTSDHMSSENGHVLPSVFYTQSGGHPIWSPKPVYKKENSPLPTSSSFQSNPESHNSEQCYHWSDDATYSSIDQTVDDKSNLDSVRHDSPAAGKNTSNSLCHDTANHINSSAYSGSDGNTTSAMVVENIHEKFSENGRHNSDGLRGMDSHRGSQREAALTKFRLKRKDRCFEKKVRYQSRKRLAEQRPRVKGQFVRQVQNDHPVANAAVGSCLSVVESICFLEASDKKSRI 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g02116 713 Pfam Response regulator receiver domain 38 149 IPR001789 GO:0000160
Bva02g02116 713 PANTHER PRR RESPONSE REGULATOR 23 234 - -
Bva02g02116 713 SMART REC_2 36 151 IPR001789 GO:0000160
Bva02g02116 713 MobiDBLite consensus disorder prediction 521 541 - -
Bva02g02116 713 MobiDBLite consensus disorder prediction 513 541 - -
Bva02g02116 713 ProSiteProfiles Response regulatory domain profile. 37 155 IPR001789 GO:0000160
Bva02g02116 713 MobiDBLite consensus disorder prediction 558 585 - -
Bva02g02116 713 PANTHER PRR RESPONSE REGULATOR 241 690 - -
Bva02g02116 713 SUPERFAMILY CheY-like 36 162 IPR011006 -
Bva02g02116 713 ProSiteProfiles CCT domain profile. 637 679 IPR010402 GO:0005515
Bva02g02116 713 PANTHER TWO-COMPONENT RESPONSE REGULATOR 23 234 IPR045279 GO:0009736
Bva02g02116 713 Gene3D - 36 265 - -
Bva02g02116 713 CDD psREC_PRR 38 141 - -
Bva02g02116 713 PANTHER TWO-COMPONENT RESPONSE REGULATOR 241 690 IPR045279 GO:0009736
Bva02g02116 713 MobiDBLite consensus disorder prediction 7 21 - -
Bva02g02116 713 MobiDBLite consensus disorder prediction 171 205 - -
Bva02g02116 713 MobiDBLite consensus disorder prediction 1 21 - -
Bva02g02116 713 Pfam CCT motif 637 679 IPR010402 GO:0005515
Bva02g02116 713 MobiDBLite consensus disorder prediction 617 637 - -
Bva02g02116 713 MobiDBLite consensus disorder prediction 166 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva02g02116 Bva-Chr2 21770073 21775255 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva02g02116 368 681 Response Regulator Gene Family AT5G24470 31.481 2.86e-22 99.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Bva02g02116 Response_reg 5.5e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva02g02116 K12130 - gmx:100779346 801.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva02g02116 02 21770073 21775255 Bva02g02116 02 21770073 21775255 ECH
Bva02g02116 02 21770073 21775255 Bva08g01991 08 13348268 13353142 ECH