Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g02108 ATGTCTCAACAAAGGCAATTCCAGATGGTGGGTGGCAACAATCCTGGGCAATACAATGATACAACTTTTAccaaaatttttgttggagGGTTAGCTTGGGAGACTCAAAGGGACGCAATGAGAAGGTATTTTGAGCAGTTTGGGGAGATCCTTGAAGCTGTTGTTATCACAGACAAAAACACTGGGAGATCCAAGGGTTATGGTTTTGTTACATTTAAGGATCCAGAGTCAGCCATGAGGGCGTGTCAGAACCCATCACCAGTTATTGATGGGAGAAGAGCAAACTGCAATCTGGCATCTCTTGGTGCAAACAAGAATCGCCCGCCCACTCCCCAACATGGTGCAGGGAGATTCAGACCAGCACCTGGTCTAGTGGCTGCACCTGTATATCATGGCTCTTCGTCTACATTTTTTCATCAACCCACTGGACAATACACATTTCCTTATTCAGCTTATGGCAGATATTCTGGATATTCACAGGAAACCATGTATCCCATgAGCTACTATAGTGTCTATGGAGGGCAACAGTTTTCACCTTATTACACTTCAACTGGGGCATCAGGGCAAGCAGGTTTGATCCATAATGTTTACCCATTTTATGCTCAATATGCACAGAGCAGCCAGGGTCATGGTTTTGGAGTTCAATATCCTCAAATGGTACAGTTCCCATTTCTGCCTCAGCACTATGGCTCTACAGGGATTTTGTCATTTCCTTCTGCAATGTCAATGCCAACTACTAGTGCAGTTACAACCACAGCAAccacaacaacaacagcagcagGGGCAGCAGCAACAGGGATCTCCCATTGGAGAGTCAATGGTTGTTGGTACCCTTCTGATATTTTTTCATGAGTATCTTTGCTGCCGCGCATCAACTGCAGGGAGGAAACCAGTCGCTCGGTTCTCATTTCTGTGAGCATAAAAATGTCGCTTGGGGAGCTTGCTGCCAGCTACGCTGTTTTGATCCTTCACGATGACAATATTCCTGTCACTGCGGAGAAGATCTCAACCTTGGTGAAAGCGGCCAAGATTGACATTGAATCTTATTGGGCAATGTTATTTGCTAAGCTTGCTGAGAAGAGAAACATTGAAGATCTCATTCTAAAtgctggtggtggtggtgctgCAGTTGCTGTAGCAGCTCCAGCATCTGTTGGTAGTGGCGctcctgctgctgctgctgctccTGCAGctgaggagaagaagaagGAAGAACCCCAGGAAGAGAGTGATGACGACATGGGATTCAGCTTGTTCGATTA 1262 0.42 MSQQRQFQMVGGNNPGQYNDTTFTKIFVGGLAWETQRDAMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQNPSPVIDGRRANCNLASLGANKNRPPTPQHGAGRFRPAPGLVAAPVYHGSSSTFFHQPTGQYTFPYSAYGRYSGYSQETMYPMSYYSVYGGQQFSPYYTSTGASGQAGLIHNVYPFYAQYAQSSQGHGFGVQYPQMVQFPFLPQHYGSTGILSFPSAMSMPTTSAVTTTATTTTTAAGAAATGISHWRVNGCWYPSDIFSVSLLPRINCREETSRSVLISVSIKMSLGELAASYAVLILHDDNIPVTAEKISTLVKAAKIDIESYWAMLFAKLAEKRNIEDLILNAGGGGAAVAVAAPASVGSGAPAAAAAPAAEEKKKEEPQEESDDDMGFSLFD 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g02108 419 SMART rrm1_1 25 97 IPR000504 GO:0003723
Bva02g02108 419 Hamap 50S ribosomal protein L12 [rpl12]. 313 419 IPR027534 GO:0003735|GO:0005840|GO:0006414
Bva02g02108 419 Pfam 60s Acidic ribosomal protein 329 418 - -
Bva02g02108 419 PANTHER BOULE-RELATED 1 260 IPR037366 GO:0003729
Bva02g02108 419 MobiDBLite consensus disorder prediction 390 419 - -
Bva02g02108 419 SUPERFAMILY RNA-binding domain, RBD 14 120 IPR035979 GO:0003676
Bva02g02108 419 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 26 83 IPR000504 GO:0003723
Bva02g02108 419 Gene3D - 1 117 IPR012677 -
Bva02g02108 419 Gene3D - 308 370 IPR038716 -
Bva02g02108 419 CDD RRM_RBM24_RBM38_like 24 99 - -
Bva02g02108 419 CDD Ribosomal_P1 312 418 - -
Bva02g02108 419 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 24 101 IPR000504 GO:0003723
Bva02g02108 419 PANTHER - 1 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva02g02108 Bva-Chr2 21735526 21740661 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva02g02108 309 419 Cytoplasmic Ribosomal Protein Gene Family AT5G47700 65.766 1.39e-33 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva02g02108 - - qsu:111994039 442.965
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva02g02108 02 21735526 21740661 Bva02g02108 02 21735526 21740661 ECH
Bva02g02108 02 21735526 21740661 Bva08g01984 08 13316999 13319792 ECH