Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g02101 ATGTCAGACGGTGCTGAAATAGATGAGCGGGTGGATTTTGATGAGGAAAACTACATGGAAGAGATGGATGATGATGTTGAGGAACAAATAGATGAAGATGGAGCAGACGGAGTCGGTGATGAGAATGTAGAAGGGAATGTTGAGGAACATGAGGATTTAGCAGCAGAGGTCAGCACAAAAGACCAATTACCTGAAGACTCAACAGCAGAGGTTGCTGCATCTATAGAAGATGAGCAAAACCAATCTTCCATTGATGaagatgagaaagagaaacatgATGAACTTCTTGCCCTTCCTCCTCATGGTTCTGAAGTTTTCGTTGGTGGACTTCCACGGGATGTGATTGAAGATGATTTGAGGGAATTGTGTGATTCAATAGGTGATATTGTTGAGGTGAGGTTGATGAAAGACAGGGAAACAGGAGAAGGTAAGGGCTATGCTTTTGTagcatttaaaacaaaagaggTTGCACAAAAGGCCATTGAAGAGTTACATAACAAGGAATTTAAGGGTAAAACATTAAGGTGTTCACTGTCTGAAACTAAACATAGATTGTTTATTGGTAATGTTCCAAAAAACTTGACTGAGGATGAGTTTAGGAAAGTCATTGAGGGTGTTGGTCCTGGAGTTGAAAACATTGAGCTCATAAAGGACCCTCAACATCCACATAGGAATCGTGggtttgcttttgttttgtattacAATAATGCGTGTGCTGATTATTCACGACAAAAAATGTTGAGCCCAAATTTTAAACTAGATGGTAATACACCAACTGTCACATGGGCTGATCCAAAGAATTCACCTGATCACTCTGCTTCCTCACAGgTTAAAGCACTTTACGTGAAAAACATACCTGAGAATACTACTACTGAACAACTCAAGGAATTATTTCGTCGCCATGGGGAAGTAACAAAAGTGGTTATGCCTCCTGGTAAAGCTGGAGGCAAACGTGATTTTGGTTTCATTCATTTTGCAGAGAGGTCGAGTGCATTGAAGGCTATAAAAGAtacagaaaaatatgaaatagatGGGCAATTGTTGGAAGTTGTTCTTGCGAAGCCTCAGACTGAGAAAAAATCTGATGGGGGTTATGGCCACAATCCTGGGTTTCATCCAAACCATCCTCCATATCCCGGGTATGGTGGCTTTTCAGGAAATCCATATGGCTCTGCAGCAACTGGATACGGTGTGACTGCTGGTTTTCAACAGCCAATGATATATGGTAGAGGTCCAATGCCAGCAGGAATGCAGATGGTCCCGATGGTTTTACCGGATGGTCGAATTGGATATGTCCTTCAACAGCCTGGTGTACAGATGCCAGTACCCCGGCCTCGTCGGAGCAATGGTCCAGGTGGTCAAGCCGGACGAGGAGGAGGCAGTGGAACTGGTAATGATGAAGGTAATCGTGGCAGAAGGTATCGACCCTATTA 1433 0.411 MSDGAEIDERVDFDEENYMEEMDDDVEEQIDEDGADGVGDENVEGNVEEHEDLAAEVSTKDQLPEDSTAEVAASIEDEQNQSSIDEDEKEKHDELLALPPHGSEVFVGGLPRDVIEDDLRELCDSIGDIVEVRLMKDRETGEGKGYAFVAFKTKEVAQKAIEELHNKEFKGKTLRCSLSETKHRLFIGNVPKNLTEDEFRKVIEGVGPGVENIELIKDPQHPHRNRGFAFVLYYNNACADYSRQKMLSPNFKLDGNTPTVTWADPKNSPDHSASSQVKALYVKNIPENTTTEQLKELFRRHGEVTKVVMPPGKAGGKRDFGFIHFAERSSALKAIKDTEKYEIDGQLLEVVLAKPQTEKKSDGGYGHNPGFHPNHPPYPGYGGFSGNPYGSAATGYGVTAGFQQPMIYGRGPMPAGMQMVPMVLPDGRIGYVLQQPGVQMPVPRPRRSNGPGGQAGRGGGSGTGNDEGNRGRRYRPY 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g02101 477 MobiDBLite consensus disorder prediction 8 39 - -
Bva02g02101 477 SUPERFAMILY RNA-binding domain, RBD 101 183 IPR035979 GO:0003676
Bva02g02101 477 PANTHER GEO13361P1-RELATED 2 475 - -
Bva02g02101 477 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 105 175 IPR000504 GO:0003723
Bva02g02101 477 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 185 246 IPR000504 GO:0003723
Bva02g02101 477 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 280 348 IPR000504 GO:0003723
Bva02g02101 477 Gene3D - 11 183 IPR012677 -
Bva02g02101 477 MobiDBLite consensus disorder prediction 438 477 - -
Bva02g02101 477 CDD RRM_SF 105 177 - -
Bva02g02101 477 Gene3D - 184 264 IPR012677 -
Bva02g02101 477 Gene3D - 266 397 IPR012677 -
Bva02g02101 477 CDD RRM3_hnRNPR_like 277 355 - -
Bva02g02101 477 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 278 355 IPR000504 GO:0003723
Bva02g02101 477 SMART rrm1_1 279 351 IPR000504 GO:0003723
Bva02g02101 477 SMART rrm1_1 184 261 IPR000504 GO:0003723
Bva02g02101 477 SMART rrm1_1 104 177 IPR000504 GO:0003723
Bva02g02101 477 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 103 181 IPR000504 GO:0003723
Bva02g02101 477 SUPERFAMILY RNA-binding domain, RBD 183 356 IPR035979 GO:0003676
Bva02g02101 477 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN Q 2 475 - -
Bva02g02101 477 MobiDBLite consensus disorder prediction 1 91 - -
Bva02g02101 477 SMART rrm2_1 104 177 IPR003954 GO:0003676
Bva02g02101 477 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 183 265 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva02g02101 Bva-Chr2 21675104 21678894 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva02g02101 105 431 Eukaryotic Initiation Factors Gene Family AT1G71770 26.178 9.97e-20 90.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva02g02101 K13161 - gmx:100800974 739.184
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva02g02101 02 21675104 21678894 Bva02g02101 02 21675104 21678894 ECH