Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g02090 ATGTTTGATCACATGGAATATTCTCATTCAGCAGCAGCCGCAGACGCAGAAACTTACAGCAGAACATGTTCGCCAGCTGAcatgagaaagaagaagtGCAATAACCAGAGAAGATTCAGTGACgaacaaatcaaatccttGGAAAGCATGTTTGAGACTGAGACAAGGCTTGAACCCAGAAAGAAGTTGCAGTTGGCAAAAGAGCTTGGCTTGCAACCGAGACAGGTTGCTATATGGTTTCAGAACAAGAGAGCTCGATGGAAGTCAAAGCAGCTTGAGCAAGACTACAGCATACTCCGAGCCAATTATAATAGCTTGTTGTCACGGTTTGATGCTGTCAAGAAGGAGAAGCAGGCATTGCTAATACAGTTGCAGAAGCTGAATGATCTGATACAAAAGCCACAAGAGCAAATTCAGCGTTGTGCACAAGTTAAAGCTGCAAACAGCATGGATAGTGAATCTGAAAATGGAGACAATACCAAGTGCCAACCTGAGCTAAATCCAAGTCCATCAATGGAAAGATCAGAACACTTACATGGCGTTCTCTCAGACGATGATAGCAGCATAAAGGCAGAGTATTTTGGCCTCGAAGATGAACCTAGTCTTCTGAATCTTGTTGAGCATGCTGATGGTTCCTTGACTTCACCAGAAGATTGGGGCACGGTTGAATCCAATGTTCTCTTAGGCCAGTCAACTAGTGACTACCAATGGTGGGATTTCTGGACCTG 728 0.4258 MFDHMEYSHSAAAADAETYSRTCSPADMRKKKCNNQRRFSDEQIKSLESMFETETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLEQDYSILRANYNSLLSRFDAVKKEKQALLIQLQKLNDLIQKPQEQIQRCAQVKAANSMDSESENGDNTKCQPELNPSPSMERSEHLHGVLSDDDSSIKAEYFGLEDEPSLLNLVEHADGSLTSPEDWGTVESNVLLGQSTSDYQWWDFWT 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g02090 242 MobiDBLite consensus disorder prediction 147 170 - -
Bva02g02090 242 SUPERFAMILY Homeodomain-like 16 92 IPR009057 -
Bva02g02090 242 ProSiteProfiles 'Homeobox' domain profile. 30 90 IPR001356 GO:0003677
Bva02g02090 242 SMART HOX_1 28 94 IPR001356 GO:0003677
Bva02g02090 242 Gene3D - 26 97 - -
Bva02g02090 242 PRINTS Lambda-repressor HTH signature 61 70 IPR000047 GO:0003677
Bva02g02090 242 PRINTS Lambda-repressor HTH signature 70 86 IPR000047 GO:0003677
Bva02g02090 242 CDD homeodomain 36 91 IPR001356 GO:0003677
Bva02g02090 242 Coils Coil 89 130 - -
Bva02g02090 242 Pfam Homeobox associated leucine zipper 90 131 IPR003106 GO:0006355|GO:0043565
Bva02g02090 242 ProSitePatterns 'Homeobox' domain signature. 65 88 IPR017970 GO:0000981|GO:0006355
Bva02g02090 242 MobiDBLite consensus disorder prediction 147 181 - -
Bva02g02090 242 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 16 241 IPR045224 GO:0003700
Bva02g02090 242 Pfam Homeodomain 36 88 IPR001356 GO:0003677
Bva02g02090 242 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-7 16 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva02g02090 Bva-Chr2 21602977 21604381 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva02g02090 34 242 Homeobox Transcription Factor Family AT2G46680 55.263 5.15e-71 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Bva02g02090 Homeodomain 2.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva02g02090 K09338 - gmx:100811208 348.206
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva02g02090 02 21602977 21604381 Bva12g01901 12 15245896 15247294 ECH
Bva02g02090 02 21602977 21604381 Bva06g03020 06 18758474 18759707 ECH
Bva02g02090 02 21602977 21604381 Bva02g02090 02 21602977 21604381 ECH
Bva02g02090 02 21602977 21604381 Bva08g01965 08 13187271 13188684 ECH