Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g02081 ATGATGATGGTCGCAGAAACATTTGCCAGCGGTCCTACTACTGAAGCTATTTCTCAGATTGTAGATATTATTAGCGAATTTGTACTCTATGCTGCTGACGTTCTTGCAAAGAAAGATAGTTTTAAGGAACTTGCAACTTATCTAGAGAGAATTGTACCTGTCTTGAAAGAATTGAGGCATATAACTGTGATTGATTCTAAGACCTTTGAGCTTGCCGTTGAGATTTTGAATCGTGAAATCAGAGATGCAAACCAACTGAGAATAGATTGCAGCAAGAAAAGCAAGGTATATCTTCTGATGAATTGTAGGACAATTGTTAAGCGTTTAAAGAATGCCACAAGTGAGATATGCCGGGCACTTGgtcttcttcctttgtccacatcatctctttcttctggaataattgaaaaaattgataatctgTGTGACAATATGCAAAAAGCTGAGTTTAAGGCAGCCATAGCCGAAGAAGAGATATTGGAGAAAATCGAGTCAGGGATACAGGAAAAGAATGTTGATCGCTCCTATGCCAATAATTTGATGAGTCTCATTGCAGAGGCTGTAGGGATCACTAAGGAGAATTcaataatgaagaaagaacTTGAAGAATTCAAAACTGAGATTGAAAATGCCCGCCTTAGGAAGGACCTGGCTGAAGCTATACAAATGGATCAGATTATTGCTTTGTTAGAAAGGGCTGACGTAGCCTCATCACCTAGAGAAAAGGAGCTGAAGTACTTTGCCAAACGCAAATCTTTGGGTAGTCAACCCTTGGAACCACTTCAGTCATTTATTTGCCCCATAACTAGGGACGTTATGGTGGATCCTGTGGAAACTTCATCAGGGCAGACATTTGAGAAAAGTGCTATAGAAAAGTGGTTTACAGAAGGAAACGCAATGTGTCCTCTTACAATGACTCCTTTAGACACTTCGGTTCTGCGACCAAACAAAACCTTGAAACAGTCAATTGAAGAATGGAAGGATAGAAATACCATGATTACAATTGCTTCAATGAGAGAAAAGCTCCACTCCGGAGATGACGATGAAGTACAACAATGTCTAGCATCTCTACAGGAGTTGTGTGAACAAAAGGACCAGCATAAGGAATGGGTGATAATGGAGAATTACATACCACTTCTTATCCAACTTCTTGGTGCCAAGAACCGAGAAGTAAGGAATAATGCTCTTGTCATCCTTTGTATGTTGGCGAAGGATAGTGATCATGCTAAGGAAAGAATTGCAAAAGTTGATAATGCAATTGAATCTGTTGTCCGTTCTCTTGGGCGTCGTGTATCGGAAAGGAAGCTCGCAGTGGCGTTACTGCTGGAATTATCCAAATATGACTTGGTACGAGACTACATTGGAAAGGTTCAAGGTTGCATTTTATTATTGGTGACTATGTCTAGCAGTGATGACAATCAAGCTGCCAGAGATGCCACAGAGTTATTGGATAATCTTTCATACTCTGATCAGAATGTTCTAAAGATGGCAAAGGCGAATCATTTCAAGCACTTGTTGCAGCGTCTTTCGACAGGACCTGATGATGTAAAAATGATTATGGCAACAACTCTAGCGGAAATGGAGTTAACTGACCACAATAAAGAGTCCTTGTTTGAAGGTGGTGTACTGGATCCTCTTCTTAAATTAGTCTCACATGTGGATGTTCAGGTGAAAATAGTTGCCGTAAAAGCTCTTCGGAACCTATCcagtttaaagaaaaatggaatacAGATGATTCAACAAGGTGCAGTACGCCCATTACTTGACCTTCTTTTCCATCATGGCATACCATCCTCAAATTTACGAGAACATGTAGCAGCTATAATTACTCTACTTGCCGCATCAACGATATCTCAAAATGGAGAGGCACCTGTTTTCTTATTAGAATCTGACGAAGATGTTTTTAACCTCTTCTCTTTGGTTAGAGTTCCAGCGCCTGATGTGCAGCAGAATGTTTTACAGACCTTTAATGCCTTGTGTCGGTCCCCTTCAGCTTCATATATCAGGGAGAAACTAATACAGTGCTCAGCTGTTCAAGAATTGGTTGGGTTGTGTGAGCATGAGAACCTAAATCTACGAGCAAGTGCGGTAAAGCTGTTTTCTTGCTTGGTAGATGGCATTGATGAAGCCACCATCCTGGACAATATGAGCCAGAAAAGCATTGAGACTTTACTCAGGATCCTGAAATCTTCTtctgatgaagaagaaattgtttCTGCCATGGGCATAATATGCTATCTTCCGCAAACTGCTCAGATCACTCAATGGTTTCTGGATGCTGGTGCACTGCtagttatttataagtatATCCAGGAAGGGAAGGAAAAAGATCTCCAAAAGTTATTAGAGAATGCTGTTGGCGCTCTATGTCGTTTCACAGTCCAAGAGAACTTGGAATGGCAAAAGAGTGCTGCCCAGACTGGGATTATACCACTTTTAGTACAGTTGCTAGAATGTGGAACAACGTTGACGAAACAACGTGCGGCATTGTCTCTTGCTCATTTTTCAATGAATTCAGTTAAGCTGACCAGGCCAATACCGAAGCGCAAAGGACTTTGGTGCTTCTCAGCTCCAGGAGAAGATGGCTGCTCGGTTCATGGAGGAGTCTGTACCGTCAAATCATCATTTTGTCTTTTGGAGGCTGAAGCAGTGGGACCACTGGCAAGGACTCTCGAGGAATCTGACCCTGGAGCCTGTGAGGCTTCTTTGGATGCACTTTTGACGTTAATTGAAGGTGAAAGACTACAGATCGGTACTAAGGTGCTTGCAGAAGCACAAGTCATACCAAAAATGATAAGATTTCTTGGCTCCCCATCCATTGGATTGCAGGAGAAGTCTCTACAAGCTTTGGAAAGGATTTTCAGGATTTTGGAGTTCAAACAGATGTATGGAGCGTCAGCTCATATGCCTCTTGTTGACTTAACACAGCGCGGTAATGGCAGCACGAGATCTTTGGCTGCTAGAATATTGGCACACTTGAATGTGCTTCATGACCAGTCTTCTTATTTCTA 3011 0.4022 MMMVAETFASGPTTEAISQIVDIISEFVLYAADVLAKKDSFKELATYLERIVPVLKELRHITVIDSKTFELAVEILNREIRDANQLRIDCSKKSKVYLLMNCRTIVKRLKNATSEICRALGLLPLSTSSLSSGIIEKIDNLCDNMQKAEFKAAIAEEEILEKIESGIQEKNVDRSYANNLMSLIAEAVGITKENSIMKKELEEFKTEIENARLRKDLAEAIQMDQIIALLERADVASSPREKELKYFAKRKSLGSQPLEPLQSFICPITRDVMVDPVETSSGQTFEKSAIEKWFTEGNAMCPLTMTPLDTSVLRPNKTLKQSIEEWKDRNTMITIASMREKLHSGDDDEVQQCLASLQELCEQKDQHKEWVIMENYIPLLIQLLGAKNREVRNNALVILCMLAKDSDHAKERIAKVDNAIESVVRSLGRRVSERKLAVALLLELSKYDLVRDYIGKVQGCILLLVTMSSSDDNQAARDATELLDNLSYSDQNVLKMAKANHFKHLLQRLSTGPDDVKMIMATTLAEMELTDHNKESLFEGGVLDPLLKLVSHVDVQVKIVAVKALRNLSSLKKNGIQMIQQGAVRPLLDLLFHHGIPSSNLREHVAAIITLLAASTISQNGEAPVFLLESDEDVFNLFSLVRVPAPDVQQNVLQTFNALCRSPSASYIREKLIQCSAVQELVGLCEHENLNLRASAVKLFSCLVDGIDEATILDNMSQKSIETLLRILKSSSDEEEIVSAMGIICYLPQTAQITQWFLDAGALLVIYKYIQEGKEKDLQKLLENAVGALCRFTVQENLEWQKSAAQTGIIPLLVQLLECGTTLTKQRAALSLAHFSMNSVKLTRPIPKRKGLWCFSAPGEDGCSVHGGVCTVKSSFCLLEAEAVGPLARTLEESDPGACEASLDALLTLIEGERLQIGTKVLAEAQVIPKMIRFLGSPSIGLQEKSLQALERIFRILEFKQMYGASAHMPLVDLTQRGNGSTRSLAARILAHLNVLHDQSSYF 1003
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g02081 1003 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 14 1003 - -
Bva02g02081 1003 Gene3D - 432 626 IPR011989 -
Bva02g02081 1003 SMART arm_5 447 488 IPR000225 GO:0005515
Bva02g02081 1003 SMART arm_5 530 570 IPR000225 GO:0005515
Bva02g02081 1003 SMART arm_5 914 955 IPR000225 GO:0005515
Bva02g02081 1003 SMART arm_5 364 404 IPR000225 GO:0005515
Bva02g02081 1003 SMART arm_5 665 705 IPR000225 GO:0005515
Bva02g02081 1003 SMART arm_5 571 614 IPR000225 GO:0005515
Bva02g02081 1003 Pfam Armadillo/beta-catenin-like repeat 531 570 IPR000225 GO:0005515
Bva02g02081 1003 Coils Coil 138 158 - -
Bva02g02081 1003 Gene3D - 627 855 IPR011989 -
Bva02g02081 1003 SUPERFAMILY RING/U-box 252 332 - -
Bva02g02081 1003 Gene3D - 12 127 IPR036537 GO:0007166
Bva02g02081 1003 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 541 583 IPR000225 GO:0005515
Bva02g02081 1003 Coils Coil 194 221 - -
Bva02g02081 1003 SMART Ubox_2 263 326 IPR003613 GO:0004842|GO:0016567
Bva02g02081 1003 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 262 330 IPR013083 -
Bva02g02081 1003 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 14 1003 - -
Bva02g02081 1003 ProSiteProfiles U-box domain profile. 259 333 IPR003613 GO:0004842|GO:0016567
Bva02g02081 1003 Gene3D - 872 1001 IPR011989 -
Bva02g02081 1003 CDD RING-Ubox_PUB 264 305 IPR045210 -
Bva02g02081 1003 SUPERFAMILY ARM repeat 335 993 IPR016024 -
Bva02g02081 1003 Gene3D - 331 431 IPR011989 -
Bva02g02081 1003 Pfam U-box domain 264 330 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva02g02081 Bva-Chr2 21538202 21544075 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva02g02081 262 1003 U-box Gene Family AT1G76390 28.662 3.20e-63 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva02g02081 - - gmx:100799969 1372.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva02g02081 02 21538202 21544075 Bva02g02081 02 21538202 21544075 ECH
Bva02g02081 02 21538202 21544075 Bva08g01957 08 13111610 13117106 ECH