Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g02078 ATGAGGCCGGTCTTCGTCGGAAACTTTGAGTACGATACTCGTCAATCAGAGCTTGAACGCTTGTTTGCGAAGTATGGGAGGATTGAGCGCGTGGATATGAAATCTGGTTTTGCCTTTGTCTACTATGAGGATGAGCGTGATGGTGAAGATGCAATACGTGCGCTTGACAATTTTCCATTTGGATATGACAAGCGAAGGCTGTCTGTGGAGTGGGCAAAAGGTGAACGGGGTAGGCATCGTGATGGACCAAAAGCAAACCAAAGGCCAACAAAAACACTATTCGTCATTAATTTTGACCCACTTCGCACAAGAGTTCATGATATAGAAAGACACTTTGAACCTTATGGGAAGGTTCTTCATGTCCGTATTCGCCGGAACTTTGCATTTGTGCAGTTTGAAACGCAAGAAGATGCTACCAAAGCTCTTGAGTGTACACATATGAGCAAGATACGGGACAGGGTGGTGTCTGTGGAGTATGCTCTGAGGGATGATGATGAGAGGGGTGACAGATATGACAGTCCTAGAAGAGGGGGTTATGGTAGGTCGCCCAGCCCTGCTTATCGCAGACGACCAAGTCCGGACTATGGTCGCCCTCGCAGCCCTCTGTATGATAGGTATAGTGGACCGGTATATGACAGGCGAAGGAGTCCTGATTTTGGCCGACAGAGAAGTCCTGAGTATGGACGACATCGCAGCCGTTCACCTATTAGAAGGTCAAGAACTTA 725 0.4786 MCISPHISAGFAFVYYEDERDGEDAIRALDNFPFGYDKRRLSVEWAKGERGRHRDGPKANQRPTKTLFVINFDPLRTRVHDIERHFEPYGKVLHVRIRRNFAFVQFETQEDATKALECTHMSKIRDRVVSVEYALRDDDERGDRYDSPRRGGYGRSPSPAYRRRPSPDYGRPRSPLYDRYSGPVYDRRRSPDFGRQRSPEYGRHRSRSPIRRSRT 215
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Bva02g02078 215 SMART rrm1_1 66 132 IPR000504 GO:0003723
Bva02g02078 215 MobiDBLite consensus disorder prediction 182 206 - -
Bva02g02078 215 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 67 129 IPR000504 GO:0003723
Bva02g02078 215 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 8 186 - -
Bva02g02078 215 SUPERFAMILY RNA-binding domain, RBD 7 137 IPR035979 GO:0003676
Bva02g02078 215 MobiDBLite consensus disorder prediction 139 215 - -
Bva02g02078 215 Gene3D - 4 58 IPR012677 -
Bva02g02078 215 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 65 136 IPR000504 GO:0003723
Bva02g02078 215 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR RS31-RELATED 8 186 IPR029537 GO:0000398|GO:0005681
Bva02g02078 215 Gene3D - 59 147 IPR012677 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Bva02g02078 Bva-Chr2 21525536 21529016 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva02g02078 8 141 Eukaryotic Initiation Factors Gene Family AT4G34110 27.922 3.58e-06 45.1
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva02g02078 02 21525536 21529016 Bva02g02078 02 21525536 21529016 ECH