Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bva02g02078 | ATGAGGCCGGTCTTCGTCGGAAACTTTGAGTACGATACTCGTCAATCAGAGCTTGAACGCTTGTTTGCGAAGTATGGGAGGATTGAGCGCGTGGATATGAAATCTGGTTTTGCCTTTGTCTACTATGAGGATGAGCGTGATGGTGAAGATGCAATACGTGCGCTTGACAATTTTCCATTTGGATATGACAAGCGAAGGCTGTCTGTGGAGTGGGCAAAAGGTGAACGGGGTAGGCATCGTGATGGACCAAAAGCAAACCAAAGGCCAACAAAAACACTATTCGTCATTAATTTTGACCCACTTCGCACAAGAGTTCATGATATAGAAAGACACTTTGAACCTTATGGGAAGGTTCTTCATGTCCGTATTCGCCGGAACTTTGCATTTGTGCAGTTTGAAACGCAAGAAGATGCTACCAAAGCTCTTGAGTGTACACATATGAGCAAGATACGGGACAGGGTGGTGTCTGTGGAGTATGCTCTGAGGGATGATGATGAGAGGGGTGACAGATATGACAGTCCTAGAAGAGGGGGTTATGGTAGGTCGCCCAGCCCTGCTTATCGCAGACGACCAAGTCCGGACTATGGTCGCCCTCGCAGCCCTCTGTATGATAGGTATAGTGGACCGGTATATGACAGGCGAAGGAGTCCTGATTTTGGCCGACAGAGAAGTCCTGAGTATGGACGACATCGCAGCCGTTCACCTATTAGAAGGTCAAGAACTTA | 725 | 0.4786 | MCISPHISAGFAFVYYEDERDGEDAIRALDNFPFGYDKRRLSVEWAKGERGRHRDGPKANQRPTKTLFVINFDPLRTRVHDIERHFEPYGKVLHVRIRRNFAFVQFETQEDATKALECTHMSKIRDRVVSVEYALRDDDERGDRYDSPRRGGYGRSPSPAYRRRPSPDYGRPRSPLYDRYSGPVYDRRRSPDFGRQRSPEYGRHRSRSPIRRSRT | 215 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bva02g02078 | 215 | SMART | rrm1_1 | 66 | 132 | IPR000504 | GO:0003723 | |
Bva02g02078 | 215 | MobiDBLite | consensus disorder prediction | 182 | 206 | - | - | |
Bva02g02078 | 215 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 67 | 129 | IPR000504 | GO:0003723 | |
Bva02g02078 | 215 | PANTHER | SERINE/ARGININE RICH SPLICING FACTOR | 8 | 186 | - | - | |
Bva02g02078 | 215 | SUPERFAMILY | RNA-binding domain, RBD | 7 | 137 | IPR035979 | GO:0003676 | |
Bva02g02078 | 215 | MobiDBLite | consensus disorder prediction | 139 | 215 | - | - | |
Bva02g02078 | 215 | Gene3D | - | 4 | 58 | IPR012677 | - | |
Bva02g02078 | 215 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 65 | 136 | IPR000504 | GO:0003723 | |
Bva02g02078 | 215 | PANTHER | SERINE/ARGININE-RICH SPLICING FACTOR RS31-RELATED | 8 | 186 | IPR029537 | GO:0000398|GO:0005681 | |
Bva02g02078 | 215 | Gene3D | - | 59 | 147 | IPR012677 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Bva02g02078 | Bva-Chr2 | 21525536 | 21529016 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Bva02g02078 | 8 | 141 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 27.922 | 3.58e-06 | 45.1 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Bva02g02078 | 02 | 21525536 | 21529016 | Bva02g02078 | 02 | 21525536 | 21529016 | ECH |