Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g02059 ATGGCACACCCGGGTTGTAATCTGAGGGGCCCGGCGAGTTCCCTTGCTGAAACAGGCTCTGGAGAAGATGATCTGTATAGAGAGCTATGGAAGCTCTGTGCAGGCCCTTTGGTGGATGTACCCCGGGCGGGAGAGAGAGCTTTCTACTTCCCTCAGGGTCACATGGAACAATTGCAAGCATCTACGAATCAGGATTTGAACTTGAACCAGCAAATGCCcgattttaatctttctccAAAGATACTCTGCCGTGTTATTGACACTTCACTGTTGGCGGAACAAGACGGTGATGAAGTCTATGCCCGAATAACTTTGCTGCCGGAAACACAAACTCTGCCATTACATCCTGATCCTTGTCCACCTGAGACTCAAAAACAAGCAATTTATTCGTTTTGCAAGATTTTGACAGCTTCAGATACCAGCACACATGGGGGATTTTCAGTTCTACGCAAGCATGCTACTGAGTGTCTGCCTCAATTGGACATGAGCCAAGCAACCCCAACCCAGGAATTGGCAGCGAAGGATCTTCATGGGTTTGAGTGGAAGTTTAAGCATATATTCAGAGgtCAACCGAAGAGGCACTTGCTCACAACTGGCTGGAGCACATTTGTCACTTCGAAAAGATTAGTTGCTGGTGATGCTTTTGTGTTTCTAAGGGGAGAGAATGGGGAGTTGAGAGTTGGTGTCAGACGTCTTGCTCGGCAGCAGATCCCAATGCCTTCATCTGTAATATCAAGCCAAAGCATGCATCTTGGAGTGCTTGCCACTGCTTCGCATGCTGTTAGGACTAGTACCATGTTTGTGGTCTTATACAAACCAAGGACTAGCCAGTTCATCATTGGCTTGAACAAATATCTTGAGGCTATGAACAACAAGTTTTCTGTTGGTATGCGTTTCAAGATGAGATTCGAGGGGGAGGATTCACCCGAGAGAAGGTTTTCTGGTACTATTGTTGGGGGTGGAGATATATCTCCAGAATGGTCAGAGTCTGAATGGCGGTCACTGCAGATTCAATGGGATGAACCAGCACCAATTCAAAGGCCAGAGAGGGTTTCTCCTTGGGAGATAGAGCCTTTTGTAGCTTCTGCTGCCTCAAATCTCACCCAGCCAGCCATGAAGAGCAAAAGGTCCCGACCTCCTGATGTTCCATCTTCCGCTGCTTCAGCTTTCTGGTATCATGGATCATCCCAATCTCAGGAGCTTACTCAATTGGGTAGTGCTGCAGATGTGCAAAGCAAAGAAAACCAGGTTGCATGGCCTATGATgcagaaagaaattgattgcAGTCCATTGAATCCTAACAATAGCTCAAGCAGCTCTAGAGTCCGGGTTGAAGGAATGTGGTCGTCTTCTCCACATTTGAATGTGTCTTCCAACTTTTTCCCTGACCCTAGGAACAATAAAGCCGTCGCGGGACAATCTTCTATCATTGGTTATGCCCCCGTTTCATCTAGGCCATGCGATAACCTTGTGTATGACCGGGcggaaaatgggaaaaaatctgaaaattcaACTGGTTTCATGTTATTCGGGGTTGATCTGAAAAACAGCTCTAACGCAGTTCCTCCTCTGGAGAAAGAAATGGGATGTTGTCCAACTAGCGGTCCCAGAGAATCCATTCCTGTTAATGCATGTGAAACTCCTAGGGGTCCCAGAGAATCCAAGATTGAGCCGAAGCAGGTTGCATCTGATGCAGCACCATTTGAGAAGCAGAGCAAGATGGTGTCTGCACCATCAGCAAGGACTCGCACTAAGGTGCAAATGCAAGGTGTTGCTGTTGGTCGAGCTGTTGACTTGACCGCGTTGAAGGGATACGACGAACTCATAGATGAGCTTGAAGACTTGTTTGATCTCAAAGGAGAACTTCGTTCAAGAGACAAATGGGCAGTCACCTTTACcgatgatgaaaatgaattgaTGCTTGTCGGCGATGATTCGTGGCCGGTGTTCTGCAACGTGGTGAAGAGGATTTTTATCATAACGAGGGAggagttgaagaagaaaaattcaaagctGAAGCTTCTGGCAACTTCATCCGAGGGTGCAGAGACTCTGCCCACTGTGGATTCAGAGAGTGGATA 2081 0.4517 MAHPGCNLRGPASSLAETGSGEDDLYRELWKLCAGPLVDVPRAGERAFYFPQGHMEQLQASTNQDLNLNQQMPDFNLSPKILCRVIDTSLLAEQDGDEVYARITLLPETQTLPLHPDPCPPETQKQAIYSFCKILTASDTSTHGGFSVLRKHATECLPQLDMSQATPTQELAAKDLHGFEWKFKHIFRGQPKRHLLTTGWSTFVTSKRLVAGDAFVFLRGENGELRVGVRRLARQQIPMPSSVISSQSMHLGVLATASHAVRTSTMFVVLYKPRTSQFIIGLNKYLEAMNNKFSVGMRFKMRFEGEDSPERRFSGTIVGGGDISPEWSESEWRSLQIQWDEPAPIQRPERVSPWEIEPFVASAASNLTQPAMKSKRSRPPDVPSSAASAFWYHGSSQSQELTQLGSAADVQSKENQVAWPMMQKEIDCSPLNPNNSSSSSRVRVEGMWSSSPHLNVSSNFFPDPRNNKAVAGQSSIIGYAPVSSRPCDNLVYDRAENGKKSENSTGFMLFGVDLKNSSNAVPPLEKEMGCCPTSGPRESIPVNACETPRGPRESKIEPKQVASDAAPFEKQSKMVSAPSARTRTKVQMQGVAVGRAVDLTALKGYDELIDELEDLFDLKGELRSRDKWAVTFTDDENELMLVGDDSWPVFCNVVKRIFIITREELKKKNSKLKLLATSSEGAETLPTVDSESG 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g02059 693 Pfam Auxin response factor 257 336 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Bva02g02059 693 SUPERFAMILY CAD & PB1 domains 579 657 - -
Bva02g02059 693 Pfam AUX/IAA family 573 617 IPR033389 -
Bva02g02059 693 PANTHER AUXIN RESPONSE FACTOR 11 13 678 - -
Bva02g02059 693 SMART B3_2 131 233 IPR003340 GO:0003677
Bva02g02059 693 MobiDBLite consensus disorder prediction 541 581 - -
Bva02g02059 693 MobiDBLite consensus disorder prediction 367 386 - -
Bva02g02059 693 Gene3D - 292 365 - -
Bva02g02059 693 Coils Coil 605 625 - -
Bva02g02059 693 ProSiteProfiles PB1 domain profile. 581 664 IPR000270 GO:0005515
Bva02g02059 693 ProSiteProfiles B3 DNA-binding domain profile. 131 233 IPR003340 GO:0003677
Bva02g02059 693 Pfam B3 DNA binding domain 131 231 IPR003340 GO:0003677
Bva02g02059 693 Gene3D - 128 232 IPR015300 -
Bva02g02059 693 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 13 678 IPR044835 GO:0003677|GO:0006355|GO:0009725
Bva02g02059 693 CDD B3_DNA 130 231 IPR003340 GO:0003677
Bva02g02059 693 SUPERFAMILY DNA-binding pseudobarrel domain 122 260 IPR015300 -
Bva02g02059 693 Gene3D - 577 669 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva02g02059 Bva-Chr2 21425903 21430680 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva02g02059 21 680 B3 DNA Binding Superfamily AT4G23980 55.970 0.0 674
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Bva02g02059 AUX_IAA 8.3e-09 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva02g02059 K14486 - gmx:100795763 894.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva02g02059 02 21425903 21430680 Bva02g02059 02 21425903 21430680 ECH