Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g02053 ATGGAATCGGAAACTCGACGAAAAATCGAGGAGACCGTGACTGATATACTGAAGAATTCCAACATTGAGGAGGTGACCGAGTTCATGGTTCGAGTGGCGGCCTCAGAGCGACTTGGAATCGACCTTTCTGACTCGGAGCACAAGCAGTTTGTGAGGAAAGTCGTGGAATCTTATCTGCTTGCTCTCGCAGAAGAAGACGAGAATCAAAGGGAAAACCCGTCTGAATTGAATGTTCCAGAAGATGGTAGAGAAGTCATGCAGGAAGTGCAGGAGGTAAAACTGAAGAGGGAGTTGAAGGATGACACAGACCGCATTATTTGCCAGCTGTCAAACAAGAGAAATGTTGTGATTCAAGATTTCAAAGGGAAAACAATGGTGTCAATTAGAGAATACTATCAAAAAGATGGAAAACAGCTTCCTGGTGTTAAAGGGATAAGCTTGCCAGCTGAACAGTGGTCAGTCCTCAAGAAGAATGTCCCTGCTATAGTGGAAGCAATCAAAAAAATGGAAGCAAAGATGAGTTCTGAGTTTAACGGTAAGCAAAATGAAGAAGTTCCTAATTCAGTTGTTGATACTTTCTCTACTGAGCTTGTTCCTGTGGATATCAGCCGCTTTAATGGGAAGAATTACCATCTCTGGGCTCAGCAGATAGGATTACTCCTGAAACAATTGAAGATTGCTTATGTACTCACTGAACCATGCCCGAGTGCTAGACCTGGACAAGATTCTAGTGCTGAAGAAAAGAGATGGGTGGATGATGATTCCCATTGTCGTCGCAACATCTTACTCTATTTATCTGACCATCTTTTTGATCAGTATGCCAAGAGGAAAATGAGTGCCAGAGAACTGTGGGAAGACTTAAAACTAACTTATCTCTATGAGGAATTTGGAACTAAGAGATCTCAAGTTAGAAAGTACATTGAATATCAGATGGTTGAGGAAAATTCAATTCTTGAGCAAGTCCAAGAATTTAACAACATTGCGGACTCTATTGTTGCTTCTGGAATTTTAGTCGATGAGAACTTTCATGTCAGCGTCATCATTTCTAAGCTTCCTCCTTCTTGGAAGAACATCTGCAACAAGTTAATGCGCGAGGAGCATTTACCTTTCTGGAAGTTAATGGAGCGTTTAAGGACCGAAGAAGCATCTCGCAATCAAAGCAAAAAGGTGGGTGAACCTTCTAATAATCCAGGCTTTCATCTGAGCAAAAGGCCTAGGGGGACAGATAATATGCCATCAGGTATGCATAGGAATAAATCAGATATGAATAGCAAGAAGATTCCCTGTTATTACTGTGGCAAGAAGGGTCATCTTCCCAAAAATTGCTGGTGGAAATCTGACAAGCAAGGTGAGGAAAGGAGAGAAGAGGAGAATGGGTCTATTTCAGAAGTTGACATGCATAGGGCTATGGAGTA 1415 0.4191 MESETRRKIEETVTDILKNSNIEEVTEFMVRVAASERLGIDLSDSEHKQFVRKVVESYLLALAEEDENQRENPSELNVPEDGREVMQEVQEVKLKRELKDDTDRIICQLSNKRNVVIQDFKGKTMVSIREYYQKDGKQLPGVKGISLPAEQWSVLKKNVPAIVEAIKKMEAKMSSEFNGKQNEEVPNSVVDTFSTELVPVDISRFNGKNYHLWAQQIGLLLKQLKIAYVLTEPCPSARPGQDSSAEEKRWVDDDSHCRRNILLYLSDHLFDQYAKRKMSARELWEDLKLTYLYEEFGTKRSQVRKYIEYQMVEENSILEQVQEFNNIADSIVASGILVDENFHVSVIISKLPPSWKNICNKLMREEHLPFWKLMERLRTEEASRNQSKKVGEPSNNPGFHLSKRPRGTDNMPSGMHRNKSDMNSKKIPCYYCGKKGHLPKNCWWKSDKQGEERREEENGSISEVDMHRAME 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g02053 471 MobiDBLite consensus disorder prediction 447 471 - -
Bva02g02053 471 Pfam DEK C terminal domain 5 59 IPR014876 -
Bva02g02053 471 ProSiteProfiles Zinc finger CCHC-type profile. 429 442 IPR001878 GO:0003676|GO:0008270
Bva02g02053 471 SUPERFAMILY Retrovirus zinc finger-like domains 413 448 IPR036875 GO:0003676|GO:0008270
Bva02g02053 471 Pfam gag-polypeptide of LTR copia-type 250 386 - -
Bva02g02053 471 Pfam Transcriptional Coactivator p15 (PC4) 107 158 IPR003173 GO:0003677|GO:0006355
Bva02g02053 471 Gene3D Transcriptional Coactivator Pc4; Chain A 97 174 IPR009044 GO:0003677|GO:0006355
Bva02g02053 471 MobiDBLite consensus disorder prediction 382 421 - -
Bva02g02053 471 PANTHER PBF68 PROTEIN 1 465 - -
Bva02g02053 471 SUPERFAMILY ssDNA-binding transcriptional regulator domain 106 168 IPR009044 GO:0003677|GO:0006355
Bva02g02053 471 PANTHER PBF68 PROTEIN 1 465 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva02g02053 Bva-Chr2 21378522 21381765 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Coactivator p15 Bva02g02053 Retrotran_gag_2 5.2e-17 CL0523
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva02g02053 - - lang:109345725 509.605