Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g02041 ATGATAATTAAGCGTactatgaaaattgaaataccGAACCTGAAGCGTTGTAAAATGGAGGAGGTGGATTCCGACGAGTATGAGTTTGATGCGATTCCGAAGAAACGGAGGGTGAATGGGTTTTACTCTCTTGGTATGCCTGGTGAGGCCGAAGATTTCAGCAGCGGTTCAGGGTCTTGGTGCAGCGAAGGGTCGTACTGGGGTAATGGTGAGGTTCAGTCGGAATCAAACTCAATGCGATTGAATAGTAGAACAGCGCTAAAACGAGGTTATAAAGGGTTTCGGCCTCCATTGTTAAAGTCCTCTCGAGGTCGTCCTCAGATACTTCCGTCGAGGTTCAATGACTCAGTTATTGATACATGGAAGAACGAAGATATTAAAGTGGAGGACACAGACTCCAGCTTCGaagatgataatatttttgtagatGATGAAGCTGGGATTAGTGGATTGGGGTTTGTGAAAAAGGAACAGAGGGATAACTATAGCTTCAAAGGTTCGAATTGTTACCCATATGTAGAAATGGACGAGGAACCAGAAATGGATAGCTTCAGTTTCAACAATTTTGATAACAGAAAGCATGCGAATTCGTTTAGTAGCATTAGGAACACAGTGGGCGGAGGTTGTTCTTTGTTAGTAAAACCAGAGAGTTATGCTACTGGACTTAGTTTTGATAGTGCAAACCAAAAGCATAGTAAAAACGCTGAGAAGAGGAAGGACATCTACAAACCAGAGGATTTTGCTCTGGGGGATATAGTTTGGGCAAAATGTGGGAAGAGATATCCGGCCTGGCCTGCTATAGTGATTGATCCCATCTTGCAAGCTCCTAAAGCAGTCCTGAGCTGTTGCGTTCCTGGTGCAATTTGCGTGATGTTTTTTGGGTattcaaaaaatggaaagcaAAGGGACTACGCATGGGTGAAGCAAGGAATGATATTCCCCTTCATGGAATTCATGGACAGATTCCAGGGGCAGACCCGGTTGTACAAGAGCAAGCCAAGTGACTTTCAGATGGCACTGGAGGAGGCATTGTTGGCAGAAGATGGTTTTATGGACTCAAACATGGGAACCGAGCAAATTACTAATATTGAAGCTCAACCCAGTGGATATACAGAGGCTTCAAATTCATATGTTGATCCCGAATATTACTCCCAGGATCAGATAAGGGATTCAAGACCTTGTGGTGGCTGTGGTTTAATTTTGCCATGCAAAACCATGAAGAAGATCAAGGATTCAAGCTGTGCAACTCAACTTTATTGTAAACATTGTTTAAAGTTAcgaaaatcaaaacaatattGTGGcatttgcaataaaatttgGCACCACTCAGATGGCGGGAATTGGGTATGTTGTGATGGTTGTAATGTTTGGGTGCACGCTGAGTGTGCAAAAATCTCCAGTAAATTGTTCAAGGATCTGGAGAATAAAGATTACTATTGTCCATATTGCAAGCCAAAATTCAACTCTAAACTGCAAGCCTCACAATCATACAAGTCAAAATTCAAATTAATGGAGGATAACCAAAGAGCTGAGATACCTGACAAGATAATAGTGGTGTGCAATGGCATGGAAGGATTTTACATTCCAAAACTTCATTTAGTTCTGTGCAACTGTGGTTCATGTGGGTCAAGGAAGCAGACGCTGAGTGAATGGGAAAGACATACAGGCTGTAGAgctaaaaaatggaaatacaGTGTGAAAGTAAAGAGTACAATGCTACCGTTGGAAAAATGGATCTCGGAGCACAATACACAAGGTGGAGTTTCCATGCAATTAGATCAGCAGCAAGTGCTTGCCTTTCTGCAAGAGAAGTATGAGCCGGTTTATGCAAAATGGACAACAGAAAGATGTGCCGTCTGCAGATGGGTTGAAGATTGGGatgataacaaaattattatctgCAACAGATGCCAAATAGCAGTCCACCAAGAATGCTATGGGGCAAAGAATGTTCAGGATTTTACTTCTTGGGTTTGTAGAGTATGTGAAACTCCTGATGTCGAGAGAGAATGTTGCCTCTGCCCTGTAAAAGGTGGTGCACTAAAGCCAACTGATGTTGAGATGCTGTGGGTTCATGTCACGTGTGCTTGGTTCCGGCCAGAAGTTGGTTTCTCAAACCATGAAATGATGGAACCTGCCTTCGGAATCTTGAAAATTCCTCCGACTTCCTTTTTGAAGATTTGTGTTATCTGTAAACAAGCTCATGGTTCCTGCACCAGTTGTTGCAAGTGTGCAACTTATTTTCATGTGATGTGCGCATCAAGAGCTGGGTACAGCATGGAATTGCATTCCATGGAGAAGAATGGGAGTCATATAGTAAGGAAGCTCATATATTGTGCTGTTCATAGGGTCCCAAATCCAGATTCAGTTCTGGTTGTACATACTCCCCTGGGGGTTTTCTCTCCCAGAACTTCACTGCAAAATCAGAAGGGATGCTTCAGGGGTTCAAGGTTGATTTCAGCAAAGAATGTAGAACTTCTTGAATCTTCAACCTCCGAGACTAATGAGTTTGAGCCACTCTCTGCTGCAAGGTGTCATGTATACAAAAGTTCTCTTAAAAAGAAGGCTGATGTGCCCATAATCCATTTAGTGAGGGGATCAAGCCATCATTCTTTAAGTGCAACAACTCAATTGAACAACAACGAGGATGCTGAAAATTCTAAAGTATTTACTTCATTCAAAGAAAGACTTTACCATTTACAGAAAACTGAAAATCATCGAGTTTGCTTTGGAAAATCGGGAATACATGGATGGGGCCTCTTTGCACGTAGAAATATACAAGAAGGAGAGATGGTTACCGAGTATCGTGGTGAACGGGTGAGGCGTAGTGTTGCTGATATGAGGGAGGCAAAGTACCGTTCAGAAGGCAAAGATTGTTACCTGTTCAAGATCAGCGAAGAAGTGGTAATTGATGCAACACACAAGGGCAACATCGCACGCTTGATAAACCACTCTTGCATGCCAAACTGTTACGCGAGAATTATGAGCATGGGTGATGATGAGAGCCGGATTGTTCTAATTGCCAAGACCAATGTTTCTGCTGGTGAAGAATTAACGTATGATTACTTATTTGATCCAGATGAGCGGGATGAACTGAAAGTTCCTTGCCTTTGCAAAGCCCCCAGTTGTAGGAAATTTATGAACTA 3146 0.4123 MIIKRTMKIEIPNLKRCKMEEVDSDEYEFDAIPKKRRVNGFYSLGMPGEAEDFSSGSGSWCSEGSYWGNGEVQSESNSMRLNSRTALKRGYKGFRPPLLKSSRGRPQILPSRFNDSVIDTWKNEDIKVEDTDSSFEDDNIFVDDEAGISGLGFVKKEQRDNYSFKGSNCYPYVEMDEEPEMDSFSFNNFDNRKHANSFSSIRNTVGGGCSLLVKPESYATGLSFDSANQKHSKNAEKRKDIYKPEDFALGDIVWAKCGKRYPAWPAIVIDPILQAPKAVLSCCVPGAICVMFFGYSKNGKQRDYAWVKQGMIFPFMEFMDRFQGQTRLYKSKPSDFQMALEEALLAEDGFMDSNMGTEQITNIEAQPSGYTEASNSYVDPEYYSQDQIRDSRPCGGCGLILPCKTMKKIKDSSCATQLYCKHCLKLRKSKQYCGICNKIWHHSDGGNWVCCDGCNVWVHAECAKISSKLFKDLENKDYYCPYCKPKFNSKLQASQSYKSKFKLMEDNQRAEIPDKIIVVCNGMEGFYIPKLHLVLCNCGSCGSRKQTLSEWERHTGCRAKKWKYSVKVKSTMLPLEKWISEHNTQGGVSMQLDQQQVLAFLQEKYEPVYAKWTTERCAVCRWVEDWDDNKIIICNRCQIAVHQECYGAKNVQDFTSWVCRVCETPDVERECCLCPVKGGALKPTDVEMLWVHVTCAWFRPEVGFSNHEMMEPAFGILKIPPTSFLKICVICKQAHGSCTSCCKCATYFHVMCASRAGYSMELHSMEKNGSHIVRKLIYCAVHRVPNPDSVLVVHTPLGVFSPRTSLQNQKGCFRGSRLISAKNVELLESSTSETNEFEPLSAARCHVYKSSLKKKADVPIIHLVRGSSHHSLSATTQLNNNEDAENSKVFTSFKERLYHLQKTENHRVCFGKSGIHGWGLFARRNIQEGEMVTEYRGERVRRSVADMREAKYRSEGKDCYLFKISEEVVIDATHKGNIARLINHSCMPNCYARIMSMGDDESRIVLIAKTNVSAGEELTYDYLFDPDERDELKVPCLCKAPSCRKFMN 1048
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g02041 1048 Pfam SET domain 917 1022 IPR001214 GO:0005515
Bva02g02041 1048 SMART PWWP_4 247 316 IPR000313 -
Bva02g02041 1048 CDD SET_SETD1-like 895 1044 - -
Bva02g02041 1048 SUPERFAMILY SET domain 899 1045 IPR046341 -
Bva02g02041 1048 Pfam PHD-finger 432 486 IPR019787 -
Bva02g02041 1048 Pfam PHD-zinc-finger like domain 670 782 - -
Bva02g02041 1048 SUPERFAMILY FYVE/PHD zinc finger 430 492 IPR011011 -
Bva02g02041 1048 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 1048 IPR025780 -
Bva02g02041 1048 CDD PHD_TCF19_like 433 483 - -
Bva02g02041 1048 Gene3D - 239 350 - -
Bva02g02041 1048 Pfam PHD-finger 629 663 - -
Bva02g02041 1048 ProSiteProfiles Zinc finger PHD-type profile. 614 665 IPR019787 -
Bva02g02041 1048 ProSiteProfiles Zinc finger PHD-type profile. 430 486 IPR019787 -
Bva02g02041 1048 ProSiteProfiles Post-SET domain profile. 1032 1048 IPR003616 -
Bva02g02041 1048 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 611 665 IPR013083 -
Bva02g02041 1048 Pfam PWWP domain 250 345 IPR000313 -
Bva02g02041 1048 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 424 508 IPR013083 -
Bva02g02041 1048 CDD PHD_ATX3_4_5_like 616 662 IPR042011 -
Bva02g02041 1048 ProSiteProfiles SET domain profile. 906 1023 IPR001214 GO:0005515
Bva02g02041 1048 PANTHER PHD FINGER PROTEINS 1 1048 - -
Bva02g02041 1048 ProSiteProfiles PWWP domain profile. 249 318 IPR000313 -
Bva02g02041 1048 SMART PHD_3 432 484 IPR001965 -
Bva02g02041 1048 SMART PHD_3 616 663 IPR001965 -
Bva02g02041 1048 SMART PHD_3 727 783 IPR001965 -
Bva02g02041 1048 SUPERFAMILY Tudor/PWWP/MBT 240 364 - -
Bva02g02041 1048 ProSiteProfiles Extended PHD (ePHD) domain profile. 668 783 IPR034732 -
Bva02g02041 1048 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 1 1048 - -
Bva02g02041 1048 SUPERFAMILY FYVE/PHD zinc finger 615 679 IPR011011 -
Bva02g02041 1048 SMART PostSET_3 1032 1048 IPR003616 -
Bva02g02041 1048 SMART set_7 906 1029 IPR001214 GO:0005515
Bva02g02041 1048 Gene3D SET domain 821 1048 IPR046341 -
Bva02g02041 1048 ProSitePatterns Zinc finger PHD-type signature. 617 662 IPR019786 -
Bva02g02041 1048 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 666 784 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva02g02041 Bva-Chr2 21304490 21312279 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva02g02041 390 457 EF-hand Containing Proteins AT5G28340 57.353 2.55e-19 90.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Bva02g02041 zf-HC5HC2H_2 2.2e-27 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva02g02041 - - gmx:100793624 1571.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva02g02041 02 21304490 21312279 Bva02g02041 02 21304490 21312279 ECH