Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g02039 atggccATCTTCAAGGTCCTCTTCCTCTGCTCCTTCATCTTTCCAGCCATATATGCCTCAGAGGATTGCCGTTTCTCCACGTGCAGCAACGATAGCATCATCATTCGATTCCCCTTCCAACTAGAAGGTGAACAGCAACCACGGAATTGTGGGTATCCTGGCTTCAACTTAATTTGCACTAACGACGGCAGCAGAACAATTCTAAAACTCCCTTACTCTGGAGAGTTCTATGTGAGCAACATCAACTATTTGACACAGCAGATACAAGTCTATGACCCTGACGGTTGCCTTCCCAAACGTCTCCTAAGCCTCAATCTCTCAGGTTCTCCTTTTGTTGCTACTTTCCGCAGAAATTATACCTTCATAAGCTGCCCATATAAAATCTCAGAATCAAACTTCACTCCCATTAATTGTCTTAGTAATTCCACAAATTCTGTACTGGCTGTCCCTTCTGCGCGGCTGGATGGTTCCTTGCCTGAATCTTGCTTCTTTATTAGTAGACTGTCAGTTCCACTTGCAAGGCCAGAACAGTATGATGAAACTTCGAGAGATGATCTGGATCAAGATCTTCGGTTAAGATGGTACCAGCCTGACTGCAGAATATGTGAATTGAACGGTATATGTGGGCCTGATAGCAGAAATGAAGATCAAATTCGTTGTGTCTCTGATTCCAGAACAGGTAATTCCAACGACGGTCTTCGAGTTTTTAGAATCATCATCTTATCCATTGCTGCACCAGCTGTAATTTGTGTTCTTGTATTGGCATGTCTTGCATGCATCATGGATAGAAGAGGCAGGGGAGGCCGCTTTGCCGGTGGCCAGAGGTCAGCTCCAACCGCAGTATCACCACAAGCCGCCATTACAACGGTGGGTCTAGACGAGTCTACAATTGAATCTTATGAAAAGGTAGTAATAGGAGAGAGCCGACGACTGCCTGGACCCAACGACGGCAGTTGCTCAATATGCCTGTCAGAGTACAATACCAAAGAGACAATCAGATTGATTCCAGAGTGCAAACACTGTTTTCATGCTGATTGCATAGACGAGTGGCTTCGCATGAACAGTTCATGTCCAGTTTGTCGTAACACCCCTTCCCCATCATCTCTTCATGTTATAGTATCCAGTGATGCTTG 1133 0.4492 MAIFKVLFLCSFIFPAIYASEDCRFSTCSNDSIIIRFPFQLEGEQQPRNCGYPGFNLICTNDGSRTILKLPYSGEFYVSNINYLTQQIQVYDPDGCLPKRLLSLNLSGSPFVATFRRNYTFISCPYKISESNFTPINCLSNSTNSVLAVPSARLDGSLPESCFFISRLSVPLARPEQYDETSRDDLDQDLRLRWYQPDCRICELNGICGPDSRNEDQIRCVSDSRTGNSNDGLRVFRIIILSIAAPAVICVLVLACLACIMDRRGRGGRFAGGQRSAPTAVSPQAAITTVGLDESTIESYEKVVIGESRRLPGPNDGSCSICLSEYNTKETIRLIPECKHCFHADCIDEWLRMNSSCPVCRNTPSPSSLHVIVSSDA 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g02039 377 SMART ring_2 319 360 IPR001841 -
Bva02g02039 377 SUPERFAMILY RING/U-box 311 364 - -
Bva02g02039 377 ProSiteProfiles Zinc finger RING-type profile. 319 361 IPR001841 -
Bva02g02039 377 CDD RING-H2_PA-TM-RING 319 361 - -
Bva02g02039 377 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 281 366 IPR013083 -
Bva02g02039 377 PANTHER RING-H2 FINGER PROTEIN ATL21A-RELATED 4 370 - -
Bva02g02039 377 Pfam Wall-associated receptor kinase galacturonan-binding 23 92 IPR025287 GO:0030247
Bva02g02039 377 Pfam Ring finger domain 318 361 IPR001841 -
Bva02g02039 377 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 4 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva02g02039 Bva-Chr2 21297439 21299553 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva02g02039 23 366 C3H Transcription Factor Family AT2G25410 44.699 2.86e-93 282
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva02g02039 - - aprc:113851081 463.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva02g02039 02 21297439 21299553 Bva02g02039 02 21297439 21299553 ECH