Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g02028 ATGAGCATTGGAACTTCTGCTAAAAGTCAGTTTTTATTCTCTGCTTCCAGTTCTCTTGGCCAAAACCTCCAGACAAGCACTTTTGTTGCGGAGAtagtttttgtaattttcatcTCCGTCTTCGGATTGGTTTTGTTCTCTGTATTTATTGGTAACATGCAgaGATATCTGCAATCTAGAATtTTTCGGCGTCTCCATAGTAAGCAGCTTCAGCACGATTTCAGGTTCTATTCCCTGCAATGGAGGACATGGGGTGCCCGTTTCATACAAGCAGCTTGGAGTCGCtacaagaaaaggaagatggAGAGATCATTGCGTGAAGCAGAAGATAGTCTGAAAGAAGCTTTGACAAATGAAGTTGAGCGCACGCCAAATCTTGGTGCCACAAGATTTGCTGCCAATGTATCGGAAAACTTGCGACATAATGGTGAGTTTCGCACTGGGTTTATTGCGTCTTCTTCTAGAATATTTGGAAGGGGTGAGCTTGTTGCTGATTCTGTCACTATAGtgaaaaaatacttatttggGTACTTTGTCGTTGACATTCTATCGATCATTCCACTGCCACAGGTGGTTGTTTTAGGTAACATTCAGATTCTGAAAAGCTCGTTTCCAGTTGACACGATTAACTTGTTGAAGATCATAACACTTGTCCAGTTTTATACCAGAGTTATACGTATATACCCAATGTGGAAACCGATGCCTAGATCATCTGCAATATTGTTGACTGGATCAGTGACAGCATCGTCGGCTTCTGTCTTACTAGcaattcatGTTGTTGGATCTTCCTATTACTTGTTATCAGTCGAATCCGTGCTTCGCTGCTGGCAAGGAGCGTTGAAGAATTCTAAATGGTACAATGCTGCGCTCTCTGATGATGTTTTCTTGAGCTGTGGACAACATAAACAAACAATTGTTTCACTTCTCAATACTTCTTGTCTTTTTATTGATGCTGATGAAATGAAAGATGCAACATCCTTCGATTTTGGAATATTTAAAGAAGCTTTATCGTCTCATGTGGTACAATCAAGTACCAAGTTTCTTCTCAAGTTCTTTTACTGCCTCTGGTGGGGTTTGCGCAATATCAGTTCTCTTGGCTCAAATCTCCAGACAAGCACTAATATTTGGGAATTACTTTTCGCATTCTTCATCTCCGTCTtcggtttattttttttcgcAGTAATTATTGGAAACATCCagagATATCTGCAATCTAGAATTGTTAGAGAAGAGAAGATGGTGAAATCCAAGGCCATAGAACGGTCGATGTCCCACCGCAAGCTACCTTATTCTTTAAGGGCAAGCATCAGACAGCATGAACGTTACAAATGGCAAGACAATTTGGGTGTTGATGAGGAAACCTTAATCCGCAACCTTCCTGAAGCTCTCAGAACAGATATAAAGCGTCGTCTTTGCTTGGCCTTGTTTAGAAAGGTGCCAATGTTTGAGATAATGGATGAAGAGTTTTTGGATGAGTTAAGTGAATTTCAACGTCTCAACAGCAAGCAGATTCAGCACACTTTCAGGTTCTATTCCGCGCAATGGAGGACATGGGCTGCCTGTTACATACAAGCAGCTTGGCGTCGGTACCAGAGAAAGAGGCTGGATAGGTCTTTATTTGAAGCAGAAGCCAGGCTACAAGGTGCTTTGGCAACAGAAGTGGGTTCACCAACTGTTAGTACCACAGATATGAGTCGAGGTTTCCTGCCAGTGCCTTTGGAATTGAGACAAATCGAAGAACCAAACAAAACTAGTTGGCATGGTAATTTTCAGCAGTTAtg 1781 0.3998 MSIGTSAKSQFLFSASSSLGQNLQTSTFVAEIVFVIFISVFGLVLFSVFIGNMQRYLQSRIFRRLHSKQLQHDFRFYSLQWRTWGARFIQAAWSRYKKRKMERSLREAEDSLKEALTNEVERTPNLGATRFAANVSENLRHNGEFRTGFIASSSRIFGRGELVADSVTIVKKYLFGYFVVDILSIIPLPQVVVLGNIQILKSSFPVDTINLLKIITLVQFYTRVIRIYPMWKPMPRSSAILLTGSVTASSASVLLAIHVVGSSYYLLSVESVLRCWQGALKNSKWYNAALSDDVFLSCGQHKQTIVSLLNTSCLFIDADEMKDATSFDFGIFKEALSSHVVQSSTKFLLKFFYCLWWGLRNISSLGSNLQTSTNIWELLFAFFISVFGLFFFAVIIGNIQRYLQSRIVREEKMVKSKAIERSMSHRKLPYSLRASIRQHERYKWQDNLGVDEETLIRNLPEALRTDIKRRLCLALFRKVPMFEIMDEEFLDELSEFQRLNSKQIQHTFRFYSAQWRTWAACYIQAAWRRYQRKRLDRSLFEAEARLQGALATEVGSPTVSTTDMSRGFLPVPLELRQIEEPNKTSWHGNFQQL 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g02028 593 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 494 557 - -
Bva02g02028 593 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 62 142 - -
Bva02g02028 593 SUPERFAMILY cAMP-binding domain-like 414 496 IPR018490 -
Bva02g02028 593 Coils Coil 98 118 - -
Bva02g02028 593 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 16 59 - -
Bva02g02028 593 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 144 493 - -
Bva02g02028 593 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 62 142 - -
Bva02g02028 593 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 16 59 - -
Bva02g02028 593 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 144 493 - -
Bva02g02028 593 SUPERFAMILY Voltage-gated potassium channels 11 58 - -
Bva02g02028 593 Pfam Ion transport protein 168 406 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Bva02g02028 593 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 494 557 - -
Bva02g02028 593 Gene3D - 144 402 - -
Bva02g02028 593 SUPERFAMILY Voltage-gated potassium channels 169 404 - -
Bva02g02028 593 Gene3D Helix hairpin bin 403 472 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva02g02028 Bva-Chr2 21256481 21261206 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva02g02028 478 562 Ion Channels AT1G01340 51.136 2.82e-19 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva02g02028 K05391 - gmx:100816236 354.369