Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g02027 ATGAATGCAAAGGGACGTAAGTTTGTGAGGTTTGAGGATTGGAGATCAGAATCATCTTATGGTGTGGAGCAGGAAAATCCCAGTAATGGATATCAAGGAAGAAAACTTGGGCCAAGCCTAAGTGCTGTTTTAAAGAGTATTAGAAGAAGAGTTGAGAGTGGTTCTGAAAGGATGAAAAGCTTGAGAAAAACTTCAGCCGTTCATCCTGTAAGTGATGGGCCTCACAAAAAAAGGGGTTCTAGCAGAAAAATTCTTGATCCACAGGGGCAAATCCTTCAGAGATGgaacaaaatatttgtaataacaAGTGTACTGGCAGTCTCTGTTGATCCCCTGTTCTTTTACGTCCCAACGGTTGATGCAGACAACAGATGCCTTCGATTGAATGAAGCTTTGCGGATCAGTGCTTCTGTTCTTCGTACATTCTTTGATCTTTTCTATGTTCTTCACATAATCATTCAGTTCCGAACTGGGTTTATAGCTCCTTCTTCTCGAGTATTTGGAAGGGGTGAGCTAATCAACGATCCTCTCGCCATAGCCAAAAGATACTTGTCTTCTTACTTCATCATTGACGTTCTGTCAATTATTCCTCTACCACAGTTGGtcgttttattaattattccgGAGATAAAAGGCTCAGTGGCAAAGGAGCTGTTGAAGTACGTAGTAATAGTTCAGTATGTGCCAAGACTAATACGGATCATTCCATTACTAACAGAAGTTACTAGAACTTCAGGCATACTGACTGAGACTGCATGGGCTGGAGCTGCGTTCAATCTTCTTCTCTATATGCTTGGAAGTCATGTTGTTGGAGCTTTCTGGTACCTGTTTTCTGTGGAATCAGAGATTCGGTGCTGGCGTCGAAATTTGTGGCGTGCTAACATCTCTGATGGAACATACTTCAGCTGTAATTACACCGAAGATGCTGTTTCAGATATCAAAAACGCTTGCGCTTTCATTGATCCTGATGAAATTACAAATTCAACAATCTACAATTTTGGGATATTCATCGACGCTCTAAAATCTCAAGTGGTAGAATCAACGGCAGCTTTTCATGAGAAGTTCTTCTACTGCTTTTGGTGGGGTCTGCGCAGTGTAAGTTCTCTTGGCCAAAACCTCAAGACAAGCACATATGTTTGGGAGATAATATTTGCTATTTCCATTGCCATCATTGGATTGGTTTTATTCGCATTACTTATTGGAAACATGCAGAAATATCTACAATCTACAACTGTGAGAGTTGAAGAAATGAGAGTTAAAAGGCGAGATACAGAGCAGTGGATGTCTCACCGCATGCTGCCTGATAACTTAAGAGACAGAATTAGACGGTACGAGCATTACAAATGGCAAGAGAACAGGGGTGTTGAAGAAGAAACGTTAATTCGCAACCTTCCTAAAGATCTCAGAAGGGATATAAAGCGTCATCTTTGCTTGGCATTGCTTAAAAAAgtGCCAATCAAGCAGCTTCAGCACACTTTCAGGTTCTATTCCTTGCAATGGAGAACATGGGGTGCCTGTTTCATACAAGCAGCGTGGCGTCGCTACACCAAAAAGAAGATTGAGAGATCGTTACGTGAAGCAGAAGATAGGCTAAAAGATGCTTTGGCGAAGGAAGATGGACACACGGCAAGTCTTGGTGCTGCAATATTTGCATCAAGGTTTGCAGCCAATGCATTGAGAAACTTGCGACAGAATGGTGAGCGCAGCAGCCGATTCCCACAGAGAATGCTACCTCTGCTGCCTCAGAAGCCAGCTGAGCCTGATTTCTCTACTCAACAACACTA 1784 0.4159 MNAKGRKFVRFEDWRSESSYGVEQENPSNGYQGRKLGPSLSAVLKSIRRRVESGSERMKSLRKTSAVHPVSDGPHKKRGSSRKILDPQGQILQRWNKIFVITSVLAVSVDPLFFYVPTVDADNRCLRLNEALRISASVLRTFFDLFYVLHIIIQFRTGFIAPSSRVFGRGELINDPLAIAKRYLSSYFIIDVLSIIPLPQLVVLLIIPEIKGSVAKELLKYVVIVQYVPRLIRIIPLLTEVTRTSGILTETAWAGAAFNLLLYMLGSHVVGAFWYLFSVESEIRCWRRNLWRANISDGTYFSCNYTEDAVSDIKNACAFIDPDEITNSTIYNFGIFIDALKSQVVESTAAFHEKFFYCFWWGLRSVSSLGQNLKTSTYVWEIIFAISIAIIGLVLFALLIGNMQKYLQSTTVRVEEMRVKRRDTEQWMSHRMLPDNLRDRIRRYEHYKWQENRGVEEETLIRNLPKDLRRDIKRHLCLALLKKVPIKQLQHTFRFYSLQWRTWGACFIQAAWRRYTKKKIERSLREAEDRLKDALAKEDGHTASLGAAIFASRFAANALRNLRQNGERSSRFPQRMLPLLPQKPAEPDFSTQQH 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g02027 594 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 487 592 - -
Bva02g02027 594 MobiDBLite consensus disorder prediction 17 36 - -
Bva02g02027 594 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 7 486 - -
Bva02g02027 594 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 487 592 - -
Bva02g02027 594 SUPERFAMILY Voltage-gated potassium channels 86 408 - -
Bva02g02027 594 MobiDBLite consensus disorder prediction 565 594 - -
Bva02g02027 594 Gene3D Helix hairpin bin 413 477 - -
Bva02g02027 594 Coils Coil 517 537 - -
Bva02g02027 594 Pfam Ion transport protein 94 414 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Bva02g02027 594 MobiDBLite consensus disorder prediction 20 35 - -
Bva02g02027 594 SUPERFAMILY cAMP-binding domain-like 415 488 IPR018490 -
Bva02g02027 594 MobiDBLite consensus disorder prediction 53 83 - -
Bva02g02027 594 Gene3D - 97 410 - -
Bva02g02027 594 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 7 486 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva02g02027 Bva-Chr2 21251712 21256150 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva02g02027 481 591 Ion Channels AT5G53130 63.717 1.59e-32 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva02g02027 K05391 - gmx:100797784 654.055