Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g01998 atgatgaaagaaaccCAGTTATCTATGATAAAGGAAACCAGGTTTTCCCAGAAGGTGGTTAGTTTTCCTGAGCAGAGAATTGTGACAAACAAGACAGTGAAGTATGGGCTTCCAGATGGAGCTCCAAAGGTAATTCGGATCTCAGTAGTGGACAATTATGCTACAGATTCTTCCAGCGAAGAAGATGACGAAGAAAAGCGACAACGACTGAGCgggaggaaaaaaattgtgaatgaGATCAGAATAGATGACGGTTCAAATTTCATGGCCTCTGGAGAAGTTAATAATCCACCTAAACAAAGGTCTAAGCAAGACAGAGTCAGAACAGAACAGCTCTCCGTAAAGCAGAGGAAGTTTCGCGGCGTCCGGCAACGGCCATGGGGCCGTTGGGCAGCAGAGATCAGAGATCCGACGAAGCGGACCCGAGTATGGCTAGGCACCTTCGACACTGCGGAGGAGGCAGCAATTGTCTACGACAGAGCAGCAATTAAGATTCGAGGTCCAAATGCTCTCACGAATTTCTCTAAATCCCCTGAGGAATGGCCGCCCGGTTTACATTTTGATAACGATGGCCATTGCGAATTGAAACCAAATTTATTCAGTAGAAGTGGGATGAATCCTGACTATGATTCAGGGAAAGAGTACCATGAATTACCTTCGCCCATCTCTGTTTTGAAATTCCAGCAGATAGAAAACGGAGAAGACATTCAAGAGTCTCAAGTGATAGAAGAAGAATCATGTTTTCAAGTTGATAATGTTTCGTTTTTGGATTCACCATTGTTTCATCTTTATTCGGATTGTTACGAAGCTCCTCCAACACCTTTTTTCGATTTCCACGAAGAAACATTTGTAACCGAGTTAATTTCTAATCAGATAGACATTCCATTTCATCTGGAAGAAGATTTTGAGTCTTGTAAATGGGATGTAGATAGTTACTACTG 941 0.4134 MMKETQLSMIKETRFSQKVVSFPEQRIVTNKTVKYGLPDGAPKVIRISVVDNYATDSSSEEDDEEKRQRLSGRKKIVNEIRIDDGSNFMASGEVNNPPKQRSKQDRVRTEQLSVKQRKFRGVRQRPWGRWAAEIRDPTKRTRVWLGTFDTAEEAAIVYDRAAIKIRGPNALTNFSKSPEEWPPGLHFDNDGHCELKPNLFSRSGMNPDYDSGKEYHELPSPISVLKFQQIENGEDIQESQVIEEESCFQVDNVSFLDSPLFHLYSDCYEAPPTPFFDFHEETFVTELISNQIDIPFHLEEDFESCKWDVDSYY 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g01998 313 SMART rav1_2 118 181 IPR001471 GO:0003700|GO:0006355
Bva02g01998 313 MobiDBLite consensus disorder prediction 99 113 - -
Bva02g01998 313 PRINTS Ethylene responsive element binding protein signature 141 157 IPR001471 GO:0003700|GO:0006355
Bva02g01998 313 PRINTS Ethylene responsive element binding protein signature 119 130 IPR001471 GO:0003700|GO:0006355
Bva02g01998 313 ProSiteProfiles AP2/ERF domain profile. 118 175 IPR001471 GO:0003700|GO:0006355
Bva02g01998 313 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF5-RELATED 18 313 - -
Bva02g01998 313 MobiDBLite consensus disorder prediction 87 113 - -
Bva02g01998 313 CDD AP2 118 174 IPR001471 GO:0003700|GO:0006355
Bva02g01998 313 Gene3D AP2/ERF domain 117 176 IPR036955 GO:0003700|GO:0006355
Bva02g01998 313 Pfam AP2 domain 118 167 IPR001471 GO:0003700|GO:0006355
Bva02g01998 313 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 18 313 - -
Bva02g01998 313 SUPERFAMILY DNA-binding domain 118 176 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva02g01998 Bva-Chr2 21077785 21079029 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva02g01998 20 309 AP2-EREBP Transcription Factor Family AT3G61630 38.679 2.13e-41 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Bva02g01998 AP2 3.4e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva02g01998 - - jre:108996430 206.838
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva02g01998 02 21077785 21079029 Bva02g01998 02 21077785 21079029 ECH
Bva02g01998 02 21077785 21079029 Bva08g01894 08 12740956 12742002 ECH