Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g01958 ATGGTCGATGGCGTTGAATTTTCCAGAACGATTTGCTCAATTTGCTTCGAAGATCTGAAACCCGTTGTTGAAGACCTCCAATCTATCTCTATTTGCGGTCATGTCTTCCACGAACTCtgTTTGCAGCAGTGGTTCGAGTACTGTGCAAGAGCAAAGAAGTATAGTTGTCCTGTTTGTAAGCAGAACTGTAGAGCAAGCGATGTTGCTCGACTTTATTTCCAGTCGGTTGGAGAAGTAAGCGATGTTTCTCTGCCAGAGAAACCCATTGATTGTGAGGTAGATGCTGGGGTTTTACGCAGAGAAGTGAAAAGATTGGAGGTGATAGTTTCAGGGCTTAGTTCGGCAGTGGAGCGGCAAGTCAAGGAATTGAGAGAGCTTAATGACGAGcTATGTACTTGCAAGGAGCAggcaaaattagaaaaaacgTCAAAAAATGAAGCCTTGACACAAAAGGCATTTATACAACAGCAGCTTAATGTGAAATCAGCAGAGcttgagaaaacaaatttggAGTGTTCAAGACTACAAGATAGAAACATGGCATTGGCTAAAGAACTTGCAGCATTCAAACTAGTATCTGATTTGGACCTAGATGAGGAGGATATTATGAAGTATGCCTCTTTGGGTAATGGGGCTAATAGCAAAGATATGATAGACACTTTGAGAAAATCTTTGGTCTTGCGGAACAGGAGTTACAAAGAATTAATCACCAAGTGCAACCTTTTAGGAAGAGGGGAGGCTCGCTATGgtaaaaaacttgaaaaggcCAGAGAGAAGATCAATAAACTGAAGGCAAGGGTGCAAGAACTGGAGACCGCTGCTGAAGTAAGAGAGAATGATGCTTTGAGGTCTCtaacaaattcaaagaaaacaaatggtaCAAAGAATCTTGAAAATAGAATCGATTGTAATTCTGAGCTCTTGTCAGCCAGCAAACTCTCATCAAAAGAGCAAGGGAAACAATCTTTGACAGTCATATCAAGAACAGATCACACTGGGAACATCAACAAATCATTACCATCCGCGGAGACAGAGAACTTTAacttttctgaaaataaagatGTGAAGTTTGGCCAAGAAAGTAGAGTCACCGTATTGCTTGATGAAGATGGAGATGGCATCTTAATAGATGAAGATGCTTCAACATTTACTAAAGATTTACCCAGTTTTGCTGTTAAGAAACCCAACCTGGCAAAGTCCGAGGTGGCTTCTGGTgtggataaagaaaaatataacctGGCTGAGCCTCCAAGAATTGATCTTGGCAATGACTTGGGTAACGCTCCTTCAGTCGCCATGGATGATTTGAAGTtatttgataatgataaaGAAGTTCTACTTCTACCCAAGATAAACATTAGAAAAGAGAATCCATTGCCATCAACACTTCCCAGTCCAGGGGATATCTGTTTTTCTGGTGGATTGCTTGGTCCTGATGGAACTCAGAGATACTTGGGTAAATGGTGCAAACGTGCGGCAAAAGGTTCAAGTAATGGTGATTTAATAGCCGTTGGGGCTGATGGTAGAGGTGGTAGAGTCAAAGTTCTGAGATCTCAAAACCAAGTAATGGATAATAAGGAGAATTCACATAGTTCAAAAAGGTTGAAAGTTGGGCCTCAAAAGAGTACTTTGCAGACCCGGGGATGCTTGCAGATAGAACACTTCTTTGCGAGGGCCACAGAGTA 1685 0.3905 MVDGVEFSRTICSICFEDLKPVVEDLQSISICGHVFHELCLQQWFEYCARAKKYSCPVCKQNCRASDVARLYFQSVGEVSDVSLPEKPIDCEVDAGVLRREVKRLEVIVSGLSSAVERQVKELRELNDELCTCKEQAKLEKTSKNEALTQKAFIQQQLNVKSAELEKTNLECSRLQDRNMALAKELAAFKLVSDLDLDEEDIMKYASLGNGANSKDMIDTLRKSLVLRNRSYKELITKCNLLGRGEARYGKKLEKAREKINKLKARVQELETAAEVRENDALRSLTNSKKTNGTKNLENRIDCNSELLSASKLSSKEQGKQSLTVISRTDHTGNINKSLPSAETENFNFSENKDVKFGQESRVTVLLDEDGDGILIDEDASTFTKDLPSFAVKKPNLAKSEVASGVDKEKYNLAEPPRIDLGNDLGNAPSVAMDDLKLFDNDKEVLLLPKINIRKENPLPSTLPSPGDICFSGGLLGPDGTQRYLGKWCKRAAKGSSNGDLIAVGADGRGGRVKVLRSQNQVMDNKENSHSSKRLKVGPQKSTLQTRGCLQIEHFFARATE 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g01958 561 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 7 73 IPR013083 -
Bva02g01958 561 CDD RING-H2 12 60 - -
Bva02g01958 561 MobiDBLite consensus disorder prediction 521 540 - -
Bva02g01958 561 SUPERFAMILY RING/U-box 9 64 - -
Bva02g01958 561 Coils Coil 246 280 - -
Bva02g01958 561 Pfam Ring finger domain 11 60 IPR001841 -
Bva02g01958 561 SMART ring_2 12 59 IPR001841 -
Bva02g01958 561 Coils Coil 158 185 - -
Bva02g01958 561 ProSiteProfiles Zinc finger RING-type profile. 12 60 IPR001841 -
Bva02g01958 561 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 559 - -
Bva02g01958 561 Coils Coil 109 129 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva02g01958 450 559 C3H Transcription Factor Family AT4G01270 39.167 2.59e-18 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva02g01958 K11985 - gmx:100812811 628.246