Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g01947 ATGTCCTCTTCCGCCGCCACCCCCACCACCACCTATGTCACCAACATCGGCCTTGGCTACTCCATCGCCATCGCCCTGGGTTTCCTCGTACTTCTCTCCACCCTCATACTCTCCTCCTACCTCTGCTGTCGCGCCTCTCGCAACCGCTCCCGAGCCCCGAACCAGAACCCGAATGCTAACCCGAACTCTGATGGCATCGTTCTTCCCCGCGTAATCTTCGTCGCCGAGGACGATGAAGGGCACGACGAAAACGTTGTCGTGGGGCTTGATGAGATTGTCATCAACTCCTACCCCAGGTTTCAGTTTAGCAAGGATGCGATGGGTGGTGGTGCTACCTGCAATAATACGACGTGTTCGATCTGTTTGTGTGAGTATAAGGAGGCCGAGATGCTGAGGATGATGCCGGAGTGCCGCCATTATTTTCACCTTTGCTGCCTCGATTCATGGTTGAAGCTTAATGGGTCCTGCCCCGTTTGCCGAAACTCACCGCTTCCGACGCCTTTGTCGACTCCTCTTCAGGAAGTGGTGCCGCTTTCTCAGTACGCGGCTGATCGGAGACGAAGGACATG 569 0.5589 MSSSAATPTTTYVTNIGLGYSIAIALGFLVLLSTLILSSYLCCRASRNRSRAPNQNPNANPNSDGIVLPRVIFVAEDDEGHDENVVVGLDEIVINSYPRFQFSKDAMGGGATCNNTTCSICLCEYKEAEMLRMMPECRHYFHLCCLDSWLKLNGSCPVCRNSPLPTPLSTPLQEVVPLSQYAADRRRRT 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g01947 189 Pfam Ring finger domain 117 160 IPR001841 -
Bva02g01947 189 SUPERFAMILY RING/U-box 117 165 - -
Bva02g01947 189 SMART ring_2 118 159 IPR001841 -
Bva02g01947 189 ProSiteProfiles Zinc finger RING-type profile. 118 160 IPR001841 -
Bva02g01947 189 PANTHER RING-H2 FINGER PROTEIN ATL67 2 188 IPR044289 GO:0016567|GO:0016740
Bva02g01947 189 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 75 164 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva02g01947 Bva-Chr2 20803625 20804194 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva02g01947 17 180 C3H Transcription Factor Family AT5G06490 38.235 3.33e-36 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva02g01947 - - pvy:116141324 265.774