Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g01920 ATGGCAGGGTGGTCGCTGCTTAATGATGGGTgtaatttagattttgttgTAACCCCTGGCAAGTTTAAACCAGAAGCATTCTTCGTGGATCTTGGACCGATTTCAGAAGGTGGTCTTGTGGGGGTTGAAGCGAACTCGGATAATACTTCTAGTGAATGTGTCTCGAATGGTTTTTCCAATAAGCTTCGATGCCGTTTTGATCATTTTCTTCGAGGGGTTTTAGAAGAGATCTataccaaaaattattttcggCTTATAACTCCAATGCTTGGAGATGGGCAACAGGTGAATTTGCAGAAGCTCTTCGTGGTTGTGAAGCAGAAAGGTGGGTATGATGCCGTCTCAGAGAACAGTTTGTGGGATTTGGTGGCCCAGGAATCTGGGTTGGGTGTGAGTGTTGGTTCATCTGTAAAGCTGATTTACAGTAAGTACTTGAATACTTTAGATTCATGGCTGAAAAGAGCTGCTAACAACAATGTATCTGATGCTGTTTTGAGTGATATTGGAGCTGAATTCAGTAGGCGTCTGATGGAGTTGCAAACCGGAGTTGAAGGGCTCTTGTCCGAATTTTCCGATAAAGAGGACAGTGATGATAAGTGTCGTCGTTTGTGTTTCAAGCGTAAACTGGACTACCGTGATGTGCAGATTTTGTGTGACACTAACAAAGTAAAGAGTATTATGACTATGGACGTTGATGAGGGCAAAAAAATTCAGTGTGGGAGACACCTTGATTTGGATATGCCAGAATGTAGGATGAATGAACCCAGAGCAGGAAACTTGTGCAACAATGTTAATGCAATGGAAAGATTGCAAGAGTTTCATGAAGACAAGATATCTGTCAATATCAAAGAAGACGCTTGTCTAGATCATGCAAGGAAGGTTTCAGTGGATGTACCTGAAGTTAGAAATATGTGCAATAGTAATGAAGTGTACAGCACACTTGGGTTGTCTGATGGAAGCAAGGGACGTGGcagtgatgatgatgatgatgatgtctTGATATTAGATCCATCCCGTGTTGATAAAGGGAGCTTCGGTCATAAGCGGAAGAGAGAGTCTATGTGGGAAATTCTAAAGTGGGTTACTGGCATAGCAAAGAATCCTTGCGATCCTTCATCTGGTTCAATACCTGAAAGGTCGAAGCGGAAGTCTCACGGTAATGAGGAGACGTGGAAGAAGGTTTTATTGTTTCGGGAAGCAGTCTTTCTGAAAAGGCATGCTGAGTCAAGCGATGAACGACATAGTTGGCAGAATCAGCGAATGCACCCTTGCTTATATGATGATCAACTTGGAGCAGCTTACAATCTTAGAGAGAGGTTGAAGTATGACAAGAGGCCTATATCTGGAAAATCTACTTGCACAGATTCATCTTTACAAACCCAGGGTGATTTGGAGAGATCTCCAAGTCCTCGCATTGAATTTCATTGTGACAAATTCCCCAAAATGCCCATTCCTTTGGGGCCTGGTTTTCAAGCTCAATTACCAGAATGGACTGGCTTGGCTTCTGAAAGTGATCCTATTTGGTTGGGAACCCAAATATGGCCAtcaaaaaatgtaaacaaCAAACTTCTCGTTGAAAGGGATTCCATTGGAAAGGGCAGACAAGACTCATGTGGCTGCCAAGTACCAGGTTCTGTTGAGTGTTTCAGATTTCATATAGCTGAGAGAAGGACTAAAGTTAAGTTGGAACTGGGTTTTACTTTTCTGGAGTGGAATTTAGATAAGGTGGGTGAAGAAGTTAGGCGATTGTGGActcaagaagaagagaagaagttCAAGGATATTGTGCAATCAAACCCTGCGTCAACAGACAGGAGTTTCtgggattatatttttagatcaTTTCCTACCAAGACCAGGGAAGATTTAGTTAGCTACTACTTTAATGTCTTTCTTTTGCAGCGCAGAGCATACCAGAATAGGCATACTCCAGATGACATTGACAGTGACGATGATGGATCAGAATCTGGAccaatgaaaaatgtttttggaCATCATGCGCAAAATTCTCTCAGGTCCACCTTATTATCCCCCAAAAAGCCTCAGGCTAAGTG 2054 0.4021 MAGWSLLNDGCNLDFVVTPGKFKPEAFFVDLGPISEGGLVGVEANSDNTSSECVSNGFSNKLRCRFDHFLRGVLEEIYTKNYFRLITPMLGDGQQVNLQKLFVVVKQKGGYDAVSENSLWDLVAQESGLGVSVGSSVKLIYSKYLNTLDSWLKRAANNNVSDAVLSDIGAEFSRRLMELQTGVEGLLSEFSDKEDSDDKCRRLCFKRKLDYRDVQILCDTNKVKSIMTMDVDEGKKIQCGRHLDLDMPECRMNEPRAGNLCNNVNAMERLQEFHEDKISVNIKEDACLDHARKVSVDVPEVRNMCNSNEVYSTLGLSDGSKGRGSDDDDDDVLILDPSRVDKGSFGHKRKRESMWEILKWVTGIAKNPCDPSSGSIPERSKRKSHGNEETWKKVLLFREAVFLKRHAESSDERHSWQNQRMHPCLYDDQLGAAYNLRERLKYDKRPISGKSTCTDSSLQTQGDLERSPSPRIEFHCDKFPKMPIPLGPGFQAQLPEWTGLASESDPIWLGTQIWPSKNVNNKLLVERDSIGKGRQDSCGCQVPGSVECFRFHIAERRTKVKLELGFTFLEWNLDKVGEEVRRLWTQEEEKKFKDIVQSNPASTDRSFWDYIFRSFPTKTREDLVSYYFNVFLLQRRAYQNRHTPDDIDSDDDGSESGPMKNVFGHHAQNSLRSTLLSPKKPQAK 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g01920 684 MobiDBLite consensus disorder prediction 450 466 - -
Bva02g01920 684 MobiDBLite consensus disorder prediction 666 684 - -
Bva02g01920 684 Pfam Myb-like DNA-binding domain 583 630 IPR001005 -
Bva02g01920 684 SMART bright_3 61 154 IPR001606 GO:0003677
Bva02g01920 684 SUPERFAMILY ARID-like 66 159 IPR036431 GO:0003677
Bva02g01920 684 ProSiteProfiles ARID domain profile. 63 153 IPR001606 GO:0003677
Bva02g01920 684 MobiDBLite consensus disorder prediction 642 684 - -
Bva02g01920 684 MobiDBLite consensus disorder prediction 450 469 - -
Bva02g01920 684 Pfam ARID/BRIGHT DNA binding domain 78 146 IPR001606 GO:0003677
Bva02g01920 684 CDD SANT 584 631 IPR001005 -
Bva02g01920 684 SMART ARID_2 57 149 - -
Bva02g01920 684 CDD ARID 67 145 - -
Bva02g01920 684 SUPERFAMILY Homeodomain-like 583 631 IPR009057 -
Bva02g01920 684 SMART sant 580 633 IPR001005 -
Bva02g01920 684 Gene3D - 51 163 IPR036431 GO:0003677
Bva02g01920 684 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 1 87 683 - -
Bva02g01920 684 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 87 683 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva02g01920 Bva-Chr2 20679601 20683352 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Bva02g01920 ARID 1.6e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva02g01920 - - adu:107485899 566.229