Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g01918 ATGCAATCTGCTGGCGGTGGCGGCCCCGGCCGGAACCCGAGTGTGGGGCCGGCAGGGCGGCCGACATCGACATCTTCAGCTGCGTCaccatcttcttcttcgtcGTCGCACTTGGGGTTAGACTCGttacagcagcagcaacagcagcaAATAGCTGGTTCTAGACAGTCATTGCAACATCAACTACTTAGAAAACCCGAAGGGAATGAAGCTTTTCTAGCTTATCAAGCTGGCCTTCAAGGGGTATTTGCGAGTAACAATTTCTCAACTCCTGCCGCAATGCAACTGCCTCAACAGTCGTGGAAATTCATTGATTTAGCTCAACATGGCTCCAGTCAGGAGGCCCAGCTCAAGGGTCAAGGTGTTGAGCAACAAATGCTAAATCCTGTACAGCAGGCATACCTTCAGTATGCTTTGCAGGCCCAACAAAAGTCTGCTCTGGCAATGCAGTCACAGCAGCAAACTAAAATGGGAATAGTAGGCTCTTCTTCTGTGAAGAATCAGGAAATGCGTATTGGAAACTTGAAAATGCAGGACCTTATGTCCATGCCAGCAGTGAATCAAGCTCAGGCATCCACATCGCGGAATTCATCTGAACATTTTACTCGTGGGGAAAATCAGAATGAGCAAGGACAGCAGCTAGTGCCTGATCATAAGGGTGAGGGGAAACCTTCAACCTCGGGGCCAGCCATTGGACACTTAATGCCTGGAAATATAAGACCTGCACAAGCACCAATGACTCAGCAGGGCATCCAAAATGTTTTGAACAACCAGATTGCAGTATCTGCTCAATTGCAGGCTATGCAGGCTTGGGCTCATGAACGTAATATAGACCTAACTCATCCTGCAAATGCTAACTTGATGGCACAGCTCTTTCCACTTATGCAATCAAGGATGGTTTCACAACAAAAGGCAAATGACAGCAATGTTGGTGCTCAGTCATCACCAGTCCCTGTTTCAAAGCAGCAAGTTACTTCACCAGCTGTTGTAAGTGAGAACTCAGCGCATGCTAATGCGTCAAGTGATGTGTCTGGGCAATCAGGTTCTGCAAAACCCAGGCAGACAGTTCCACCCAGCCATTTAGGCCCACCAACAAATGTTGGTATCACCAGTAATGTCAATGACATGGCAGTGCAGCAGTTTAGTGTTCATGGCAGAGAGTCTCAAGCACACCTGAGGCCGCCAGTAGTAGGAAATGGGATGCCTCCTGTGCATCCTCATCAGTCTTCTGGTAATGTGAACCTAGGTGCAGATCACCCTTTGAATGCTAAGAATTCATTATCTGGTTCCGAACCTCCGCAAATGCAGTACATCAGGCAGTCAAAACAACCTTCTCCTCAGTCTGCTGGTACATCAAATGAAGGAGGTTCAGGAAATCATGTCATATCTCAAATGGTACCAGCTCAGGTGCCTCAAAAAATTGGATTTACTAAACCGCAATTGCATGTTCTTAAAGCACAGATACTAGCATTGAGGCGGTTGAAGAAAGGTGAAGGTACACTCCCACAAGAACTACTTCGAGCTATTGTCCCACCACCTCTTGAGTTGCAAGTGCAGCAAAGTCATCCTGtgggagaaaaaaatcaagataaaTCTGTTTTAAATACTGGAGCTGAACACCCTAGGAAGATTGATTCTATGGCAAAGGATTCACAATCTATCCCTGCAACTaatggaccaagttcttcAAAGCAGGAAGCCCTAGCCAGAGATGAGAAAGCTGCTGTACCAGCAGTTCATATGCAAGCTATGCCAGCTGTGACAAAGGAATCTGCGTCGACCTTACCTGCTGAAAAGGAAGAGCAGCAGTCAGTTGGATCCTCTGTTAAGCCAGACCATGAAAATGAACGAGGAATTAGCAGAACCCCTGTGAGAAATGAGTTGCCATTAGATAGGGGAAAGGCTATTGTATCACAGACCTCTGTATCTGATGCAATGCAAATTAAGAAACCTGCACAAGTAGGCACTGTTGCTCCATCAAAGGATTTGGCTTCATCCAGAAAATATCATGGACCTCTATTTGATTTCCCCTTTTTCACCAGGAAACCAGACTCCTTTGGGTCATCAATGTTggtaaataacaataatttgtCACTGGCATATGATGTCAAAGATCTTCTCTTTGAGGAGGGTCTGGAGGTTCTTACCAAGAAAAGGACAGAAAGTTTAAAGAAGATTGAAGGTTTATTGGCAGTAAACTTAGAGAGGAAAAGGATTAGGCCAGATCTGGTCTTGAGGttgcaaattgaagaaaaaaagcttCGTCTTTTAAATCTTCAGGCTCGTCTAAGGGATGAGATTGATCAACAACAGCAAGAAATAATGGCAATGCCGGACAGGCCATATCGTAAGTTTGTTAGACTGTGTGAGCGCCAACGTCTAGAACTCGCCAGACAAGTGCAGGCCTCACAAAGGGCTTTAAGGGAGAAGCAAATCAAGTCTATTTTTCTATGGCGGAAGAAGCTTCTTGAGGCACATTGGGGCATTCGTGATGCTCGAACTGCCCGCAACAGGGGGGTGGCCAAATATCACGAGAGAATGTTGAAGGAGTTCTCAAAACGTAAAGATGATGACAGGAACAAAAGGATGGAAGcccttaaaaataatgatgttgATAGATATAGGGAGATGCTGCTAGAACAGCAGACTAGCATCCCAGGTGATGCTGCAGAAAGATATGCTGTTCTTTCAACATTCTTAACCCAGACGGAAGAGTATCTTCATAAATTGGGAAGTAAGATAACAGCTGCTAAAAACCAACAGGAAATGGAGGAGGCAGCAAGAGCTGCAGCAGCTGCTGCACGGTTGCAGGGTCTCTCGGAAGAAGAAGTTAGAGCTGCAGCAGCTTGTGCTGGAGAAGAAGTGATGATTAGAAATCATTTTATGGAGATGAATGCTCCTAGAGACAGTTCATCTGTCAGCAAGTATTACAGCCTTGCACATGCTGTGAATGAAAAGGTCATTAGACAACCATCAATGTTACGGGCTGGAACCTTGAGAGACTATCAGCTTgtTGGCTTGCAATGGATGCTTTCTTTGtataacaacaaattaaatggAATTTTGGCAGATGAGATGGGTCTTGGTAAAACTGTTCAGGTTATGGCATTGATAGCCTACTTAATGGAATTTAAAGGAAATTATGGTCCACATCTTATAATAGTCCCAAATGCTGTTTTGGTTAACTGGAAGAGTGAGTTACACACTTGGTTACCCACTGTGTCTTGCATCTATTATGTTGGAGGGAAGGATCAAAGATCAAAACTATTTTCTCAAgtggTTTCTGCTATGAAGTTTAATGTCCTTGTGACAACATATGAGTTCATTATGTATGACCGGTCAAGACTTTCCAAAATTGATTggaaatatatcataattgaTGAAGCACAGAGGATGAAGGATAGAGATTCAGTTCTAGCCCGTGATCTTGACAGATATCGTTGTCACAGACGTCTACTTCTGACTGGAACACCACTACAGAATGATTTGAAGGAACTCTGGTCCCTTTTAAACTTACTTCTTCCAGAGGTTTTTGACAACCGAAAAGCATTTCATGATTGGTTTTCAAAACCTTTTCAAAGGGAAGGTCCTACTCAAAATGCAGAGGACGATTGGCTTGAGACAGAGAAAAAAGTTATCATTATCCATCGACTTCATCAAATTCTTGAGCCTTTCATGCTAAGGCGACGTGTAGAAGATGTTGAAGGCTCACTACCTCCGAAGGTCTCTATAGTTTTGAGATGTAGAATGTCAGCATTCCAGAGCTTCATATATGACTGGGTCAAATCTACTGGTACACTTCGACTTGATCCCGAGGATGAGAATCTTAAGGTTGAAAAGAATCCAGTCTACCAGCCCAAGCagtataaaactttaaataacaGGTGTATGGAGCTGCGGAAAACTTGCAATCATCCATTGCTTAATTACCCATACTTCACTGATTTGTCCAAGGATTTCCTTATCCGATCCTGTGGGAAATTGTGGATCCTGGATAGGATTCTTATAAAACTTCAGAGAACTGGACATCGGGTTCTGCTCTTCAGTACCATGACTAAACTCCTAGATATATTGGAAGAATACCTCCAATGGAGACGACTTGTGTACAGAAGAATTGATGGGACAACTAGTTTGGAAGACCGTGAATCAGCTATAGTGGACTTCAATGGCCAGGATTCAGAATGTTTCATCTTCTTGCTTAGTATTCGAGCTGCTGGACGAGGCCTTAACCTGCAGTCTGCTGACACAGTTATCATATATGATCCTGATCCAAATCCTAAAAATGAGGAACAGGCTGTTGCCAGAGCTCATCGCATTGGACAGACAAGAGAAGTCAAAGTTATCTACATGGAAGCAGTTGTTGACAAAATCCCTAGCCATCAGAAAGAGGATGAACTGAGAAGTGGAGGCATTGTTGATATGGAGGATGAACTTGCTGGTAAGGATCGCTATATGGGATCCATCGAGGGCCTCATAAGGAACAATATTCAACAGTATAAGATAGACATGGCTGATGAGGTAATCAATGCTGGGCGTTTTGACCAAAGAACAACACATGAAGAGAGGCGCATGACTTTGGAGACATTATTACATGATGAGGAAAGGTATCAAGAAACTGTCCATGATGTTCCCTCACTACAGCAGGTTAATCGCATGATTGCTAGGAGTAAAGAGGAGGTTGAACTATTTGATCAAATGGATGAAGAATTGGATTGGATTGAGGAGATGACACAACATGATCAGGTGCCTAAATGGCTTCGAGCCACCACAAAAGAGGTGAATGCCACGATTGCTGCTTTATCAAAACGACCATCAAAGAACACACTCTTGGGCAGTAATATTGCTGTGGAATCCATTGAAATTGGTTCGGCTGAAAGGAGAAGGGGAAGGCCTAAGGGGAAAAAACCTCCTAGTTATAGAGAGTTAGAGGATGAGAATGGAGAATACTCTGAAGCTAGTTCTGAAGAGAGAAATGGATATTCTGCAcaggaagaagaggaaatagGAGAATTTGAAGATGACGGGGATAGTGGGGCTGAGGGCACTCATCCCATTGACAAAGATCAATTGGATGAAGATGGGCCACTTTGTGATGGCGGATATGAATTTCCTCGGTCTTCTGAAAGTGCTAGAAATAATCATATGGTTGAAGAAGCTGGTACTTCAGGGTCATCCTCAGACAGTCAAAGATTGACACAGACTGTATCTCCTTCAGTTTCCTCTCAGAAATTTGGTTCCCTTTCTGCATTGGATGCAAAGCCAAGTTCAGTATCAAAAAGGATGACAGATGagttagaggaaggagaaatTGCTGTATCTGGTGATTCTCACATGGATCACCAACAATCTGGAAGTTGGATTCATGATCGTGATGAAGGTGAAGATGAACAGGTTTTGCAACCCAAAATTAAGCGTAAACGTAGTCTTCGTGTTCGACCCCGCAATGCCATGGAAAGACCTGAGGAAAAGTCAGGCAGTGAGATGGCATCTCTCCAACACGGAGAATCATCTCCTTTGGCTATCCAAGCAGACCATAGGTATCCAGGGCCATCAAAAACTGATCTAGAACCAAAATCATTTGGTGACTCTAATTCTATCAGGCATGATCAGATTGAgtcaacattaaaaaataagcgTATTTTACCTTCAAGGAGGGTAGCTAATACATCCAAATTACATGGCTCACCTAAGCCTAGTCGATTGAATTGCATTTCTGCTCCTTCAGAGGATGGTGAACACTCTAGAGAAAGTTGGGAGCAGAAGCCTATGAATTCAAGTGGGTCTTCAGCTTTTGGTACTAAAATGCCTGAAATCATCCAGAGAAGGTGCAAGAATGTAatcaacaagcttcaaaggaGAATAGACAAGGAAGGTCACCAAATTGTACCTTTGGTAACGGATTTGTGGAAGAGGATTGAAAATTCTGGATTCACTGGTGGATCCGGGAATAGCCTGTTGGATCTACGGAAGATTGACCAGCGAATTGATAGATTGGAGTATAATGGAGTAATGGATCTTATTTTCGATGTGCAGTTCATGTTGAAGGGTGCAATGCATTTTTATGGGTTCTCATATGAGGTAAGAACCGAAGCAAGAAAGGTTCATGATCTCTTTTTTGACCTGTTGAAAATTGCATTTCCTGATGGGGACTTCCGAGAGGCAAGAAAAGGACTTTCTTTCTCTGGTCAAGTTTCTGCCAGTAATGTGACATTCCCAAAACAAGGAGCAGTTAGCCAGAACAAGAGACACAAGCAGATAAATGAGGTTGAAAATGATCCATGCCCTTCCCAGAAGCCACTGCAACGTGGATTCCCCTCTGGGGTTGAAAACACAAGGACCAAAGGGCATGTGTCTCAGAAGGAATCTAGAATAGCAATCGGCAGTGGGAGCAGCAGAGAGCAACCTCAACAGGATGATTCTCCAGTGCTTACTCATCCAGGTGAACTGGTGGTGTgtaagaagagaagaaatgagCGGGAGAAATCATTGGGGAAGACAAGGACTGGCTCAGCTGGGCCTGGCCCTGTTTCACCACCTCCTGCTATTAGAAGTCCAGGGCCCAAGGATGCTAGACTTGCTCAACAAGCTGGGTGGCCCACCCAACCCGGTCAACAACCGAATGGGTCCGGATCCGGGTCTGGGTCAGTTGGGTGGGCAAACCCTGTAAAGCGATTAAGAACAGATTCTGGCAAGAGAAGACCAAGTCATCTATA 6713 0.4245 MQSAGGGGPGRNPSVGPAGRPTSTSSAASPSSSSSSHLGLDSLQQQQQQQIAGSRQSLQHQLLRKPEGNEAFLAYQAGLQGVFASNNFSTPAAMQLPQQSWKFIDLAQHGSSQEAQLKGQGVEQQMLNPVQQAYLQYALQAQQKSALAMQSQQQTKMGIVGSSSVKNQEMRIGNLKMQDLMSMPAVNQAQASTSRNSSEHFTRGENQNEQGQQLVPDHKGEGKPSTSGPAIGHLMPGNIRPAQAPMTQQGIQNVLNNQIAVSAQLQAMQAWAHERNIDLTHPANANLMAQLFPLMQSRMVSQQKANDSNVGAQSSPVPVSKQQVTSPAVVSENSAHANASSDVSGQSGSAKPRQTVPPSHLGPPTNVGITSNVNDMAVQQFSVHGRESQAHLRPPVVGNGMPPVHPHQSSGNVNLGADHPLNAKNSLSGSEPPQMQYIRQSKQPSPQSAGTSNEGGSGNHVISQMVPAQVPQKIGFTKPQLHVLKAQILALRRLKKGEGTLPQELLRAIVPPPLELQVQQSHPVGEKNQDKSVLNTGAEHPRKIDSMAKDSQSIPATNGPSSSKQEALARDEKAAVPAVHMQAMPAVTKESASTLPAEKEEQQSVGSSVKPDHENERGISRTPVRNELPLDRGKAIVSQTSVSDAMQIKKPAQVGTVAPSKDLASSRKYHGPLFDFPFFTRKPDSFGSSMLVNNNNLSLAYDVKDLLFEEGLEVLTKKRTESLKKIEGLLAVNLERKRIRPDLVLRLQIEEKKLRLLNLQARLRDEIDQQQQEIMAMPDRPYRKFVRLCERQRLELARQVQASQRALREKQIKSIFLWRKKLLEAHWGIRDARTARNRGVAKYHERMLKEFSKRKDDDRNKRMEALKNNDVDRYREMLLEQQTSIPGDAAERYAVLSTFLTQTEEYLHKLGSKITAAKNQQEMEEAARAAAAAARLQGLSEEEVRAAAACAGEEVMIRNHFMEMNAPRDSSSVSKYYSLAHAVNEKVIRQPSMLRAGTLRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHTWLPTVSCIYYVGGKDQRSKLFSQVVSAMKFNVLVTTYEFIMYDRSRLSKIDWKYIIIDEAQRMKDRDSVLARDLDRYRCHRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSKPFQREGPTQNAEDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAFQSFIYDWVKSTGTLRLDPEDENLKVEKNPVYQPKQYKTLNNRCMELRKTCNHPLLNYPYFTDLSKDFLIRSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAIVDFNGQDSECFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQTREVKVIYMEAVVDKIPSHQKEDELRSGGIVDMEDELAGKDRYMGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDVPSLQQVNRMIARSKEEVELFDQMDEELDWIEEMTQHDQVPKWLRATTKEVNATIAALSKRPSKNTLLGSNIAVESIEIGSAERRRGRPKGKKPPSYRELEDENGEYSEASSEERNGYSAQEEEEIGEFEDDGDSGAEGTHPIDKDQLDEDGPLCDGGYEFPRSSESARNNHMVEEAGTSGSSSDSQRLTQTVSPSVSSQKFGSLSALDAKPSSVSKRMTDELEEGEIAVSGDSHMDHQQSGSWIHDRDEGEDEQVLQPKIKRKRSLRVRPRNAMERPEEKSGSEMASLQHGESSPLAIQADHRYPGPSKTDLEPKSFGDSNSIRHDQIESTLKNKRILPSRRVANTSKLHGSPKPSRLNCISAPSEDGEHSRESWEQKPMNSSGSSAFGTKMPEIIQRRCKNVINKLQRRIDKEGHQIVPLVTDLWKRIENSGFTGGSGNSLLDLRKIDQRIDRLEYNGVMDLIFDVQFMLKGAMHFYGFSYEVRTEARKVHDLFFDLLKIAFPDGDFREARKGLSFSGQVSASNVTFPKQGAVSQNKRHKQINEVENDPCPSQKPLQRGFPSGVENTRTKGHVSQKESRIAIGSGSSREQPQQDDSPVLTHPGELVVCKKRRNEREKSLGKTRTGSAGPGPVSPPPAIRSPGPKDARLAQQAGWPTQPGQQPNGSGSGSGSVGWANPVKRLRTDSGKRRPSHL 2237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g01918 2237 MobiDBLite consensus disorder prediction 1861 1879 - -
Bva02g01918 2237 MobiDBLite consensus disorder prediction 187 214 - -
Bva02g01918 2237 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1233 1571 IPR027417 -
Bva02g01918 2237 Pfam SNF2-related domain 1002 1306 IPR000330 GO:0005524|GO:0140658
Bva02g01918 2237 MobiDBLite consensus disorder prediction 2071 2237 - -
Bva02g01918 2237 MobiDBLite consensus disorder prediction 550 565 - -
Bva02g01918 2237 MobiDBLite consensus disorder prediction 17 59 - -
Bva02g01918 2237 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1011 1176 IPR014001 -
Bva02g01918 2237 MobiDBLite consensus disorder prediction 384 461 - -
Bva02g01918 2237 MobiDBLite consensus disorder prediction 1782 1803 - -
Bva02g01918 2237 Gene3D - 990 1238 IPR038718 -
Bva02g01918 2237 MobiDBLite consensus disorder prediction 605 621 - -
Bva02g01918 2237 MobiDBLite consensus disorder prediction 187 230 - -
Bva02g01918 2237 Pfam QLQ 476 509 IPR014978 GO:0005524|GO:0005634|GO:0006355
Bva02g01918 2237 Coils Coil 749 773 - -
Bva02g01918 2237 MobiDBLite consensus disorder prediction 2149 2165 - -
Bva02g01918 2237 MobiDBLite consensus disorder prediction 1813 1828 - -
Bva02g01918 2237 MobiDBLite consensus disorder prediction 300 370 - -
Bva02g01918 2237 MobiDBLite consensus disorder prediction 588 625 - -
Bva02g01918 2237 MobiDBLite consensus disorder prediction 1706 1755 - -
Bva02g01918 2237 Gene3D - 1239 1449 IPR027417 -
Bva02g01918 2237 MobiDBLite consensus disorder prediction 1676 1694 - -
Bva02g01918 2237 PANTHER ATP-DEPENDENT HELICASE BRM 35 2162 IPR031056 GO:0006338|GO:0006355|GO:0008094|GO:0040029
Bva02g01918 2237 SMART ultradead3 995 1184 IPR014001 -
Bva02g01918 2237 MobiDBLite consensus disorder prediction 1624 1931 - -
Bva02g01918 2237 MobiDBLite consensus disorder prediction 2197 2216 - -
Bva02g01918 2237 CDD SF2_C_SNF 1325 1450 - -
Bva02g01918 2237 MobiDBLite consensus disorder prediction 2123 2141 - -
Bva02g01918 2237 CDD Bromodomain 1939 2042 - -
Bva02g01918 2237 PANTHER SNF2/RAD54 HELICASE FAMILY 35 2162 - -
Bva02g01918 2237 SUPERFAMILY Bromodomain 1986 2044 IPR036427 GO:0005515
Bva02g01918 2237 MobiDBLite consensus disorder prediction 405 461 - -
Bva02g01918 2237 MobiDBLite consensus disorder prediction 1757 1774 - -
Bva02g01918 2237 Pfam Helicase conserved C-terminal domain 1329 1440 IPR001650 -
Bva02g01918 2237 SMART helicmild6 1356 1440 IPR001650 -
Bva02g01918 2237 SMART QLQ_2 474 511 IPR014978 GO:0005524|GO:0005634|GO:0006355
Bva02g01918 2237 MobiDBLite consensus disorder prediction 1 59 - -
Bva02g01918 2237 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1330 1507 IPR001650 -
Bva02g01918 2237 SMART bromo_6 1936 2047 IPR001487 GO:0005515
Bva02g01918 2237 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 981 1229 IPR027417 -
Bva02g01918 2237 MobiDBLite consensus disorder prediction 540 574 - -
Bva02g01918 2237 ProSiteProfiles QLQ domain profile. 475 511 IPR014978 GO:0005524|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva02g01918 Bva-Chr2 20661230 20672748 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva02g01918 1020 1465 RAD5 or RAD16-like Gene Family AT1G02670 25.479 2.36e-27 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Bva02g01918 SNF2_N 5.8e-64 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva02g01918 - - gmx:100807104 3346.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva02g01918 02 20661230 20672748 Bva02g01918 02 20661230 20672748 ECH