Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g01907 atggAGGGGAAAGAGGAAGATGTGAGGCTGGGAGCTAACAAGTTCACAGAAGGGCAACCCATTGGAACCTCAGCACAGGGTAAAGACTACAAGGAGCCACCACAAGCACCATTATTTGAGCCTGAGGAGCTTCAATCATGGTCTTTCTGGAGAGCTGGGATTGCTGAGTTCATAGCCACCTTCTTGTTCCTCTACGTCACCCTTCTTACTGTAATGGGCGTTTCTAAGGCGGGGCCCAACAAGTGTGCTTCTGTGGGTGTTCAGGGCATTGCTTGGGCCTTTGGAGGCATGATTTTTGCCCTTGTTTACTGCACTGCTGGTATCTCAGGTGGTCACATCAACCCAGCAGTGACATTTGGTCTTTTCCTGGCAAGGAAGCTCTCACTGACCAGGGCATTGTTCTATATGGTGATGCAATGCCTTGGTGCAATCTGCGGTGCTGGTGTTGTGAAAGGCTTCCAGCCACACCTGTATCAGCAATCGGGCGGTGGAGCGAATGTGGTAAACGATGGCTACACCAAGGGACATGCTCTTGGTGCCGAGATTGTTGGAACTTTCGTTCTTGTCTACACAGTTTTCTCTGCAACAGATGCTAAGAGGAATGCCAGAGACTCTCATGTCCCTATCTTGGCACCTCTTCCAATTGGGTTTGCTGTGTTTTTGGTGCACTTGGCCACCATCCCTATCACCGGAACCGGTATAAACCCAGCACGGAGCTTGGGAGCAGCTGTCATTTTCAACAGGGACCATGCTTGGGATCACCAGtGGATCTTCTGGCTTGGACCATTTATTGGAGCAGCACTTGCTGCCATGTACCAGCAGGTAGTGATCAGAGCAATTCCATTCAAGAGTAGAGCTTA 860 0.5012 MEGKEEDVRLGANKFTEGQPIGTSAQGKDYKEPPQAPLFEPEELQSWSFWRAGIAEFIATFLFLYVTLLTVMGVSKAGPNKCASVGVQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFQPHLYQQSGGGANVVNDGYTKGHALGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAVIFNRDHAWDHQWIFWLGPFIGAALAAMYQQVVIRAIPFKSRA 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g01907 286 Pfam Major intrinsic protein 43 272 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva02g01907 286 PANTHER AQUAPORIN PIP1-2 1 285 - -
Bva02g01907 286 Gene3D Glycerol uptake facilitator protein. 36 284 IPR023271 -
Bva02g01907 286 CDD MIP 51 276 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva02g01907 286 PRINTS Major intrinsic protein family signature 94 118 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva02g01907 286 PRINTS Major intrinsic protein family signature 216 238 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva02g01907 286 PRINTS Major intrinsic protein family signature 51 70 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva02g01907 286 PRINTS Major intrinsic protein family signature 131 150 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva02g01907 286 PRINTS Major intrinsic protein family signature 180 198 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva02g01907 286 PRINTS Major intrinsic protein family signature 256 276 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva02g01907 286 ProSitePatterns MIP family signature. 112 120 IPR022357 -
Bva02g01907 286 TIGRFAM MIP: MIP family channel proteins 55 271 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva02g01907 286 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 285 IPR034294 -
Bva02g01907 286 SUPERFAMILY Aquaporin-like 43 278 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva02g01907 Bva-Chr2 20610962 20614565 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva02g01907 1 285 Major Intrinsic Protein MIP AT4G23400 86.760 9.17e-175 482
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva02g01907 K09872 - oeu:111390030 514.612
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva02g01907 02 20610962 20614565 Bva02g01907 02 20610962 20614565 ECH