Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g01905 ATGAGGGCTTCTTCTGGAGGCACAAACTCTTTCGGCCTAGGCTCTGAAGGACTTCATCAGCCtccttcatattttatttgtccaATCTTCCAGGAAGTCATGCAAGATCCTCAGGTTGCTGCAGATGGTTTTACATATGAAGCTGAGGCAATACGAGGATGGCTGGACAGCGGTCACGACACTTCACCAATGACAAATCTTAAGCTTGCGCATAACAATCTTGTTCCCAACCGTGCTCTTCGCTCTGCAGTCCAGGACTGGCTTCAGAGCCATTG 275 0.4618 MRASSGGTNSFGLGSEGLHQPPSYFICPIFQEVMQDPQVAADGFTYEAEAIRGWLDSGHDTSPMTNLKLAHNNLVPNRALRSAVQDWLQSH 91
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g01905 91 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 19 91 IPR013083 -
Bva02g01905 91 CDD RING-Ubox_WDSUB1_like 25 66 - -
Bva02g01905 91 SMART Ubox_2 24 87 IPR003613 GO:0004842|GO:0016567
Bva02g01905 91 Pfam U-box domain 22 91 IPR003613 GO:0004842|GO:0016567
Bva02g01905 91 ProSiteProfiles U-box domain profile. 20 91 IPR003613 GO:0004842|GO:0016567
Bva02g01905 91 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 33 13 87 - -
Bva02g01905 91 SUPERFAMILY RING/U-box 16 91 - -
Bva02g01905 91 PANTHER OS02G0152300 PROTEIN 13 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva02g01905 Bva-Chr2 20592688 20592963 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva02g01905 1 91 U-box Gene Family AT2G45910 73.626 2.05e-43 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva02g01905 - - gmx:100807515 170.244