Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g01902 ATGGCAGTGGTGAGTCCCGTGCCTGAAATTCCACAACAAGTCACTTCTGCGAGGCTGCCTCATAATATTGGTATTGCTGGAACCATGGCTAGTAGGGGAGATGTTGTAGAGGAGCCCGTTCCAGCGGTGGTGGACGATACAATCCATGTTTCTGTAGCAAAAGATGTGAAAGATAGCAAAACAAATCTGATATGGGCAATACAGAACTCTGGAGGAAAAAAGATTTGCTTGCTGCATGTTTATGTGCCTGCGACAATGATTCCCTTGATGGGCACAAGATTTCGTGCGGATTCATTGCAAGAACAGCAAGTTGAAGCATACCGGGAtggtgaaaggaaaaatatgcaTAAGAATCTGAACGAATATCTTCTCATATGTCAAAAAATGGGGGCACGAGCTGAGAAACTGCATATTGAAATGGATTCAATTGAGAAGGGAATTGTAGAACTCATCTCGCAACATAACATTCGAAAACTTGTTATGGGAGCAGCATCTGATAAGTACCATTCTAGGAGAATGATGGACCTCAGATCTAAGAAAGCCATTTATGTACGTGAAAAAGCTCCATCTTATTGTCATATACAGTTTATATGCAAAGCGCGCCTTATACACACAAGGGGTTGCATTTTAGAGGTTGTACCTCCTTTGCTGCAGCAAATGCCAAACTCCGAAGCTGGACGGTCACTCCCCTTGAGGTCTCAATCTATAGCAGTGGGACATAATGATCTAGGAAGACTCGTTAATCCAGAAATGTTTCGCAGAGTAAGGTCTTCCATTGATGGGCAGGGACGGAGCTCAGTGCAAATTCCAGATGGCATTGAAGGGATTTCATTTCTCAGTAACAGGCTGGGTTCAGAATTAAGTTCTGATGAGTCAGATAGGCTGTCAGGGAGTCGTTCAGTTTTATCGACCAGCTCTGACAGTGGTACAATTGAAGTAGCATTGACCCGGAATTTAATTACTGAGGGGATCGAGAATGGATTAGACTTGAGCGAACTTTCTTTGACAAGAGAAGATCGTTTTCTCTCATCTGCACCAAATGTACTGCAGGATGGAGGAGGCGATTCTCTCTATGATCAACTTGATCAGGCCATGGCTGAGGCTGATAATGCTAGGCGGGATGCATATCAAGAATCTGTTAGGCGTGGGAAAGCTGAGAAAGATGCCATTGAGGCTATACGCAGGGTTAAAGCCTCTGAAAGCTTATATATGGAGGGGTTAAAACTGAGGAAAGCGGTGGAAGAAGcactagaaaaagaaaaagtagaactTGAAAGTATGAAGAATCAGCATAACAAAATTGAGGAAGAACTCCGACTTGCACTAGATCAGAAATCATCACTAGAgattcgacttgcttcaactGAACATATGGTCAGAGAATTGGAACAGAAGATTATATCTGCTGTGGATTTGTTGCAAAGTTACAATAAAGAACGAGATGAGTTGCAGTCGCAGCGTGATGAAGCATTGAGAGAGGCTGAGGAGTTGAGGAAAAAACAAGGAGAGACCTCAAGTACACATGTGCCTCAATTGTTTTCAGACTTCTATTTTGCAGAGATTGAAGAAGCAACGGGTAACTTGAATCCATCCCTAAAGATTGGTGAAGGTGGTTATGGAAGTATATATAAAGGTCTCCTGCGTCATACAGAGGTGGCTATAAAGATGTTACACTCTGACAGCTTGCAAGGACCCTCAGAGTTTCAACAGGAGGTTGATGTATTGAGTAAGTTACGGCATCCAAATCTTATCACACTTATAGGAGCCTGCCCAGAGTCTTGGACTCTTGTTTATGAGTATTTACCCAATGGGAGCCTTGAAGATCGGCTCAGCTGCAAGAACAACACACCTCCATTATCATGGCAAACTCGAATTCGTATTGCCGCAGAACTCTGCTCTGCCcttatctttcttcattccagtAAACCTCACAGCGTAGTGCATGGTGACTTGAAACCTTCAAACGTTCTCCTCGATGCTAACCTTGTTAGCAAGCTTAGTGACTTTGGAATCTGCCGTATATTATCTCGTCATGAGTCCTCAAGTAACAATAGTACACTGTTCTGGAGAACTGACCCCAAGGGCACTTTTGCCTACATGGATCCTGAATTCCTTGCTTCAGGGGAACTCACTCCAAAGTCAGATGTTTATTCATTTGGAATCATATTACTAAGATTGTTGACTGGGAGACCAGCTTTGGGAATAACCAAGGAAGTGCAATATGCATTAGATTCTGGAAATTTGAAATCCCTTTTGGATCCTTTGGCCGGAGACTGGCCATTTGTACAGGCTGAACAGTTGGTTCGCTTGGCATTGAGGTGTTCTGAGATTAATAGAAAGAACCGGCCGGACCTTTATTCCGAAGTCTGGAGAATACTAGAACCAATGAGGGCTTCTTCTGGAGGCACAAACTCTTTCGGCATAGGCTCTGAAGGACTTCATCAACCtccttcatattttatttgtccaATCTTCCAGGAAGTCATGCAAGATCCTCAGGTTGCTGCAGATGGTTTTACATATGAAGCTGAGGCAATACGAGGATGGCTGGACAGCGATCACGACACTTCACCAATGACAAATGTTAAGCTCGCGCATAACAATCTTGTTCCCAACCGTGCCCTTCGCTCTGCAGTCCAGGACTGGCTTCAGAGCCATTG 2660 0.4241 MAVVSPVPEIPQQVTSARLPHNIGIAGTMASRGDVVEEPVPAVVDDTIHVSVAKDVKDSKTNLIWAIQNSGGKKICLLHVYVPATMIPLMGTRFRADSLQEQQVEAYRDGERKNMHKNLNEYLLICQKMGARAEKLHIEMDSIEKGIVELISQHNIRKLVMGAASDKYHSRRMMDLRSKKAIYVREKAPSYCHIQFICKARLIHTRGCILEVVPPLLQQMPNSEAGRSLPLRSQSIAVGHNDLGRLVNPEMFRRVRSSIDGQGRSSVQIPDGIEGISFLSNRLGSELSSDESDRLSGSRSVLSTSSDSGTIEVALTRNLITEGIENGLDLSELSLTREDRFLSSAPNVLQDGGGDSLYDQLDQAMAEADNARRDAYQESVRRGKAEKDAIEAIRRVKASESLYMEGLKLRKAVEEALEKEKVELESMKNQHNKIEEELRLALDQKSSLEIRLASTEHMVRELEQKIISAVDLLQSYNKERDELQSQRDEALREAEELRKKQGETSSTHVPQLFSDFYFAEIEEATGNLNPSLKIGEGGYGSIYKGLLRHTEVAIKMLHSDSLQGPSEFQQEVDVLSKLRHPNLITLIGACPESWTLVYEYLPNGSLEDRLSCKNNTPPLSWQTRIRIAAELCSALIFLHSSKPHSVVHGDLKPSNVLLDANLVSKLSDFGICRILSRHESSSNNSTLFWRTDPKGTFAYMDPEFLASGELTPKSDVYSFGIILLRLLTGRPALGITKEVQYALDSGNLKSLLDPLAGDWPFVQAEQLVRLALRCSEINRKNRPDLYSEVWRILEPMRASSGGTNSFGIGSEGLHQPPSYFICPIFQEVMQDPQVAADGFTYEAEAIRGWLDSDHDTSPMTNVKLAHNNLVPNRALRSAVQDWLQSH 886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g01902 886 PANTHER U-BOX KINASE FAMILY PROTEIN 24 885 - -
Bva02g01902 886 Gene3D Phosphorylase Kinase; domain 1 506 600 - -
Bva02g01902 886 Pfam U-box domain 817 886 IPR003613 GO:0004842|GO:0016567
Bva02g01902 886 SMART Ubox_2 819 882 IPR003613 GO:0004842|GO:0016567
Bva02g01902 886 Gene3D Transferase(Phosphotransferase) domain 1 601 805 - -
Bva02g01902 886 ProSiteProfiles Protein kinase domain profile. 528 797 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva02g01902 886 SUPERFAMILY Protein kinase-like (PK-like) 505 792 IPR011009 -
Bva02g01902 886 Coils Coil 410 500 - -
Bva02g01902 886 CDD RING-Ubox_WDSUB1_like 820 861 - -
Bva02g01902 886 MobiDBLite consensus disorder prediction 287 306 - -
Bva02g01902 886 CDD STK_N 47 199 - -
Bva02g01902 886 Gene3D HUPs 50 189 IPR014729 -
Bva02g01902 886 Pfam Protein kinase domain 533 783 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva02g01902 886 SMART serkin_6 528 796 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva02g01902 886 Coils Coil 354 378 - -
Bva02g01902 886 ProSitePatterns Protein kinases ATP-binding region signature. 534 555 IPR017441 GO:0005524
Bva02g01902 886 ProSitePatterns Serine/Threonine protein kinases active-site signature. 646 658 IPR008271 GO:0004672|GO:0006468
Bva02g01902 886 PANTHER OS02G0152300 PROTEIN 24 885 - -
Bva02g01902 886 ProSiteProfiles U-box domain profile. 815 886 IPR003613 GO:0004842|GO:0016567
Bva02g01902 886 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 815 886 IPR013083 -
Bva02g01902 886 SUPERFAMILY RING/U-box 811 885 - -
Bva02g01902 886 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 59 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva02g01902 Bva-Chr2 20582060 20587763 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva02g01902 1 886 U-box Gene Family AT2G45910 55.130 0.0 930
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Bva02g01902 Pkinase 2.8e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva02g01902 - - gmx:100807515 1191.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva02g01902 02 20582060 20587763 Bva02g01902 02 20582060 20587763 ECH
Bva02g01902 02 20582060 20587763 Bva08g01820 08 12295595 12301971 ECH