Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g01880 ATGGATCGGGGGGATCAAATGGCGTTGTCTGGGTCTGCACCTTACTATATGCAGAGAGGAATAGCTGTTTCTGGGGCACAACCTGAGCTACAAAGTATTCGTCCCTTGTCTAATCCAAATATACCATTTCAACCTGGCATTGGGGTTGGTAACATTGGGTCCTCCCTACCATTAGAATCTTCGTCCATTTCACCTCATGGTGTCAATGTGGGTGCTCCTGCTGGAGCGCCACCTGGGGAACCtgtcaaaaggaaaagaggaagGCCTAGGAAATATGGGCCTGAGGGGACTGTATCATTGGCATTAACTCCATCACCATCTAGTCATCCTGGAACCATGACGCAAAGCCAGAAACGTGGTAGAGGTCGCCCACCTGGGACAGGGAAGAAACAACAGTTGGCTTCTCTTGGTGAATTAATGTCTGGTTCAGCTGGGATGGGTTTTACACCCCATATCATCACCATTGCAGTTGGAGAAGACATTGCTACAAAAATAATGGCATTTTCACAACAGGGACCTAGAGCTGTATGCATTTTATCAGCCAATGGTGATGTCTCCACTGTGACACTTCGTCAGCCTTCAACTTCTGGTGGCTCTGTCACATACGAGGGGCGTTTCGAGATATTGTGCCTTTCAGGCTCTTACTTGGTTACTGATAGTGGTGGCTCCCGCAACCGAAGTGGTGGACTCAGCGTCTCCCTTGCTAGCCCAGATGGTCGTGTCATCGGCGGAGGAGTTGGTGGAATGCTTATTGCAGCAAGTCCTGTTCAGGTGATAGTTGGGAGCTTTGTATGGGGAGGATCAAGgacaaagaacaagaaaaaggaagatggGGAAGGTGCAGAAGTTGGCATGGACTCAGATCATCATGGAGTTCATACCCCAGCGGCATTGAACAGCATTTCTCAAAATCAAACTCAAACCCTTACTCCAACCTCATCCATAGGTGGTTGGCCAGCGTCACGTCCATTGGATATGCGCAATTCCCACATTGACATTGATTTAATGCGTGGGTG 1016 0.4695 MDRGDQMALSGSAPYYMQRGIAVSGAQPELQSIRPLSNPNIPFQPGIGVGNIGSSLPLESSSISPHGVNVGAPAGAPPGEPVKRKRGRPRKYGPEGTVSLALTPSPSSHPGTMTQSQKRGRGRPPGTGKKQQLASLGELMSGSAGMGFTPHIITIAVGEDIATKIMAFSQQGPRAVCILSANGDVSTVTLRQPSTSGGSVTYEGRFEILCLSGSYLVTDSGGSRNRSGGLSVSLASPDGRVIGGGVGGMLIAASPVQVIVGSFVWGGSRTKNKKKEDGEGAEVGMDSDHHGVHTPAALNSISQNQTQTLTPTSSIGGWPASRPLDMRNSHIDIDLMRG 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g01880 338 CDD DUF296 149 263 IPR005175 -
Bva02g01880 338 MobiDBLite consensus disorder prediction 58 132 - -
Bva02g01880 338 ProSiteProfiles PPC domain profile profile. 144 285 IPR005175 -
Bva02g01880 338 MobiDBLite consensus disorder prediction 100 121 - -
Bva02g01880 338 SMART AT_hook_2 83 95 IPR017956 GO:0003677
Bva02g01880 338 SMART AT_hook_2 118 130 IPR017956 GO:0003677
Bva02g01880 338 SUPERFAMILY AF0104/ALDC/Ptd012-like 148 265 - -
Bva02g01880 338 MobiDBLite consensus disorder prediction 269 289 - -
Bva02g01880 338 Pfam Plants and Prokaryotes Conserved (PCC) domain 150 264 IPR005175 -
Bva02g01880 338 Gene3D - 150 283 - -
Bva02g01880 338 MobiDBLite consensus disorder prediction 269 323 - -
Bva02g01880 338 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 31 314 IPR039605 GO:0003680
Bva02g01880 338 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 31 314 - -
Bva02g01880 338 MobiDBLite consensus disorder prediction 296 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva02g01880 Bva-Chr2 20457378 20463028 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva02g01880 1 338 AT-hook Motif Nuclear Localized (AHL) Family AT3G61310 49.441 3.99e-87 264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva02g01880 - - gmx:100814615 476.092
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva02g01880 02 20457378 20463028 Bva02g01880 02 20457378 20463028 ECH