Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g01869 ATGAATAACAGAGCGAGATACCCACCTGGGATCGGTATGGGTCGAGGGGGAGGGATGAACACGAACCCTGCTTTTCAGCCGAGACCCCCACAGCAACAGTACGTGCAGAGGAATTTCGTGCAAAATCAACAGCAGTACCAGCATCATCAACACCAACAGCAGCTGCAGCAACAACAGTGGCTGAGAAGGACGCAGTTGGGAGGTAACGATGCCACCGTGGTTGACGAGGTGGAGAAGACTGTGCAGTCTGAAGCCGTTGACCCAAGtTCACAAGATTGGAAGGCAAGACTAAAATTACCACCACCTGATACACGCTACAGGACAGAGGATGTGACAGCTACTAAAGGAAATGAATTTGAGGATTACTTTTTGAAACGTGAGCTGCTTATGGGAATTTATGAGAAGGGGTTTGAAAGGCCTTCTCCTATTCAGGAAGAAAGTATTCCAATTGCTCTTACTGGTAGTGACATTCTTGCTAGGGCTAAAAATGGAACTGGCAAAACAGCTGCCTTTTGCATTCCTGCATTGGAAAAAATTGATCAGGATAACAATGTTATTCAAGTTATTATACTTGTACCAACAAGAGAGTTGGCTCTGCAAACATCTCAAGTGTGTAAGGAGCTGGGGAAACATTTGAATATTCAAGTTATGGTCACAACTGGTGGTACCAGCCTGAAGGATGATATCATGCGTTTATATCAACCAGTTCATTTACTTGTTGGAACTCCAGGAAGAATATTAGATCTTTCCAAAAAGGGCATTTGTATTTTGAAAGATTGCAATATGCTTGTTATGGATGAGGCTGATAAGCTTCTGTCCCCAGAGTTCCAACCTTCAATAGAACAACTGATTCATTTTCTGCCTCCAACTCGCCAAATCCTGATGTTTTCTGCCACATTTCCTGTTACTGTTAAGGATTTTAAAGATAGATATCTTCAAAAACCATATATAATTAACCTTATGGATGAGCTAACTCTGAAAGGTATTACACAATTTTATGCATTTGTGGAAGAGCGACAGAAAGTGCACTGCCTGAATACCCTTTTCTCTAAGCTACAAATAAACCAGTCAATTATCTTCTGCAATTCAGTTAATCGGGTTGAGCTTCTTGCCAAAAAAATCACAGAACTTGGTTATTCATGTTTCTATATTCATGCAAAGATGTTGCAAGATCACCGTAACAGAGTTTTTCATGACTTCCGCAATGGTGCATGCAGAAATCTTGTTTGTACTGATCTTTTCACAAGGGGTATAGACATTCAGGCGGTCAACGtggttattaattttgattttcccaAGAACTCAGAAACTTATCTGCATAGGGTTGGTCGGTCTGGGAGGTTTGGGCACCTTGGTTTAGCAGTGAATTTAATCACTTACGAGGACCGCTTTAACTTATATAGGATGGAACAAGAACTTGGCACTGAAATAAAGCAAATTCCACCACACATTGATCAGGCGATTTATTGCCGGTG 1475 0.4108 MNNRARYPPGIGMGRGGGMNTNPAFQPRPPQQQYVQRNFVQNQQQYQHHQHQQQLQQQQWLRRTQLGGNDATVVDEVEKTVQSEAVDPSSQDWKARLKLPPPDTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVIILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGICILKDCNMLVMDEADKLLSPEFQPSIEQLIHFLPPTRQILMFSATFPVTVKDFKDRYLQKPYIINLMDELTLKGITQFYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRMEQELGTEIKQIPPHIDQAIYCR 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g01869 491 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 12 26 491 - -
Bva02g01869 491 Pfam DEAD/DEAH box helicase 142 306 IPR011545 GO:0003676|GO:0005524
Bva02g01869 491 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 26 491 - -
Bva02g01869 491 SMART helicmild6 368 449 IPR001650 -
Bva02g01869 491 Pfam Helicase conserved C-terminal domain 343 449 IPR001650 -
Bva02g01869 491 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 117 145 IPR014014 GO:0003724
Bva02g01869 491 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 328 488 IPR001650 -
Bva02g01869 491 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 148 318 IPR014001 -
Bva02g01869 491 CDD SF2_C_DEAD 329 458 - -
Bva02g01869 491 Gene3D - 101 321 IPR027417 -
Bva02g01869 491 CDD DEADc_DDX6 119 319 - -
Bva02g01869 491 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 187 471 IPR027417 -
Bva02g01869 491 MobiDBLite consensus disorder prediction 82 108 - -
Bva02g01869 491 SMART ultradead3 136 332 IPR014001 -
Bva02g01869 491 Gene3D - 322 491 IPR027417 -
Bva02g01869 491 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 264 272 IPR000629 -
Bva02g01869 491 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva02g01869 Bva-Chr2 20404908 20410060 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva02g01869 117 488 Eukaryotic Initiation Factors Gene Family AT3G19760 38.503 4.14e-96 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva02g01869 K12614 - tcc:18614173 854.358