Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g01824 ATGCACAGTTCAACTCCGTCACCTTCTTCTCTGCCCGATGGCGCCGTCGACAGCTCACCTCTCCTCAGCTACTCCTTCTCCGACCAACTCATCCGGAGCCGCCGCATCATGCGCCGTACTCCGCCGTCTTTACGCACCGCAGCCCGGTTCTTCCGTCGTGCTAGTGGGCGCCGGATGATGCTCCGGGAACCTTCGTTGCAGGTCCGGGAGAATGCGGCGGAGCAGCTGGAGGAGCGCCAGAGCGATTGGGCTTACTCAAAGCCGGTGATCATGTTCGATATCTTGTGGAATATGGCGTTTCTAGCAGTTGGTGTCACTGTCTTGGGACTGAGCACCAAGGAAAACCCATCTGTGCCTCTGAGGCTGTGGCTTGTTAGCTACTTGTTGCAGGGTGTGTTGCACTGTGCGTGTGTGATTGTGGAATATAGGCGAAGGAACCAAGCAGATTCTACTGGGAATTGGGGAAGTGGTAGACATTCTAATTTCAGTTCTGGGAGTGATGGAGAGGATTCTGTTACAGAGCAGCTGCAGGAGGATGACGATAACAGCATTATAAAGCAGATAGAGTCTGCAAATACTATGCTTTCATTCATATGGTGGATTATGGGATTCTACTGGTTAACTTCTAACGGCCCGAGCTTGTCAAGCGATTCACCTCAGCTTTACTGGCTTTCTGTCACATTTCTTGCTTTCGACGTTGTGATTGTAATGATCTGTGTTGCTGTTGCGTGCCTTATTGGTATTGCTGTTTGCTGCTGCTTGCCGTGCATACTTGCTATCTTGTATCTAGTTGCAGATCAGGAAGGAGCAACCAAAGAAGAGATTGATCGGTTGCCAAAATACAAGTTCCGGAGGATGGATCAATTTCAGAAAGAGAATAATGATATTCAAGAATCTTCCAAAGGAATACTAACAGAATGTGATAGTGATACACCTTTAGAGCATGTTCTTCCTTTGGAAGATGCAGAATGCTGTATCTGCCTCTGTGCCTATGATGATGGTGCTGAGCTTAGAGAACTTCCGTGTAACCACCATTTCCACTGTGCCTGTCTCGACAAGTGGTTGCACATAAATGCTACCTGCCCTCTCTGCAAGTTCAACATTTTGAGGAATGATAACAGTCCAGAAGTTTA 1133 0.4828 MHSSTPSPSSLPDGAVDSSPLLSYSFSDQLIRSRRIMRRTPPSLRTAARFFRRASGRRMMLREPSLQVRENAAEQLEERQSDWAYSKPVIMFDILWNMAFLAVGVTVLGLSTKENPSVPLRLWLVSYLLQGVLHCACVIVEYRRRNQADSTGNWGSGRHSNFSSGSDGEDSVTEQLQEDDDNSIIKQIESANTMLSFIWWIMGFYWLTSNGPSLSSDSPQLYWLSVTFLAFDVVIVMICVAVACLIGIAVCCCLPCILAILYLVADQEGATKEEIDRLPKYKFRRMDQFQKENNDIQESSKGILTECDSDTPLEHVLPLEDAECCICLCAYDDGAELRELPCNHHFHCACLDKWLHINATCPLCKFNILRNDNSPEV 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g01824 377 SMART ring_2 324 364 IPR001841 -
Bva02g01824 377 CDD RING-H2_RNF111_like 323 367 - -
Bva02g01824 377 Pfam Ring finger domain 323 365 IPR001841 -
Bva02g01824 377 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 10 374 - -
Bva02g01824 377 SUPERFAMILY RING/U-box 314 371 - -
Bva02g01824 377 MobiDBLite consensus disorder prediction 148 173 - -
Bva02g01824 377 PANTHER TARGET OF ERK KINASE MPK-1 10 374 - -
Bva02g01824 377 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 310 370 IPR013083 -
Bva02g01824 377 ProSiteProfiles Zinc finger RING-type profile. 324 365 IPR001841 -
Bva02g01824 377 MobiDBLite consensus disorder prediction 148 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva02g01824 Bva-Chr2 20232150 20235444 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva02g01824 7 372 C3H Transcription Factor Family AT1G68070 46.361 2.00e-111 327
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva02g01824 - - qsu:111991620 525.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva02g01824 02 20232150 20235444 Bva02g01824 02 20232150 20235444 ECH