Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g01822 ATGAGTTTTGGGGGTTTTCTGGACAGCAACTCCGGTGGTGGCGTTGCGAGAATCGTAGCTGATATTCCTTACAGCAACGGTACCAACAACAGCAGCAGTAGCAGCAACGATAGAATGCCCTCTAGTGCAATCTCACAGCCACGCCTTGTCACTCCCACTTTGGCCAAATCCATGTTCAACTCTCCTGGGCTCTCTCTTGCTCTTCAAACTAATATAGATGGGCAAGGGGAAATGAATAGAATACCTGAAAATTATGAATCAATTGGTGGGAGAAGGAGCAGAGAAGAAGAGCATGAAAGCAGATCTGGCAGTGATAACATGGAAGGTGCTTCTGGGGATGATCAAGATGCCGCCGACATCCCACCCAGAAAGAAACGCTATCACCGACACACACCTCAGCAAATACAAGAGCTAGAAGGTCTGTTTAAGGAGTGTCCTCACCCGGATGAGAAGCAAAGACTGGAGCTTAGCAAAAGGCTTTGCTTGGAAACTAGGCAGGTGAAATTCTGGTTTCAAAATAGACGAACACAAATGAAGACCCAATTGGAACGCCATGAGAACACTTTGCTTAGGCAAGAGAACGATAAGCTCAGAGCTGAGAACATGTCTATAAGGGATGCTATGAGGAATCCCGTATGCTCAAACTGTGGTGGCCCAGCTATTATTGGAGAGATTTCATTGGAGGAGCAGCATCTTAGAATTGAGAATGCTCGATTAAAGGATGAGCTAGACCGAGTTTGTGCACTTGCTGGCAAGTTTCTGGGTCGACCCATTACATCTTTGGCTAACTCAATTGCGCCTCCATTGCCAAACTCAAGTTTGGAGCTAGGAGTTGGGAGCAATGGTTTTGGTGGGATGAGCACTGTGGCTACAACATTGCCTTTGGCGCCTGATTTTGGGGTAGGGATTTCTAGCCCTTTAGGTCTGGTGCCTCCTGCACCTAGACCAACGGCTGGGGTCACTGGCCTCGATAGATCAATTGAGAGGTCTATGTTTCTAGAGCTTGCTTTGGCTGCCATGGATGAGTTGGTGCAGATGGCGCAGACTGGTCAACCTCTTTGGATCAGGAGCTTAGAAGGGGGAAGAGAGATGCTGAACCATGAAGAGTACATGAGGACATTCACTCCTTGCATTGGCTTGAAACCCAATGGGTTTGTAAGTGAGGCATCTAGGGAGACTGGGATGGTCATCATAAACAGCTTGGCCCTTGTTGAGACTCTAATGGACTCAAATCGATGGGCAGAAATGTTTCCTTGTTTGATTGCCAGAACCTCTACCACTGAAGTAATATCTAGTGGAATGGGAGGAACCAGGAATGGTGCACTTCAATTAATGCATGCTGAGCTCCAAGTTCTTTCCCCTTTGGTTCCGGTTCGTGAGGTCAATTTTCTACGATTTTGCAAGCAGCACGCTGATGGGGTGTGGGCTGTGGTCGATGTGTCCATAGACACCATCCGAGAACCTTCTGGTGCACCGACATTTATAAACTGCAGGAGGCTACCTTCTGGTTGTGTGGTGCAAGATATGCCTAATGGTTATTCTAAGGTGACATGGGTGGAACATGCAGAATATGACGAGATTCAAGTACACCAGCTGTATAGACCCTTGTTAAGCTTTGGCATGGGCTTTGGAGCCCAGCGTTGGGTCACCACCCTTCAGCGCCAATGCGAGTGTCTTGCCATCTTAATGTCCTCTACCGTCCCCTCTCGAGACCACACTGCAATAAACCCAAGTGGGAGGCGTAGCATGCTGAAGCTCGCACAACGTATGACCAACAACTTCTGTGCCGGAGTTTGTGCTTCGACGGTACACAAATGGAACAAGCTCAACGCCGGCAATGTGGACGAGGATGTTCGGGTTATGACCCGGAAGAGCGTGGACGACCCCGGTGAGCCTCCGGGCATTGTGTTAAGCGCCGCTACCTCCGTTTGGCTACCGGTTTCGCCTCAAAGATTGTTCGATTTCCTGCGGGACGAACGCCTCCGAAGTGAGTGGGACATTCTATCAAACGGTGGACCCATGCAGGAGATGGCCCACATCGCCAAGGGCCAAGACCACGGCAACTGCGTCTCCCTCCTCAGAGCCAGTGCGATGAATGCGAACCAGAGTAGTATGCTAATATTGCAGGAGACTTGCATAGATGCGGCCGGGTCGCTTGTCGTGTACGCGCCGGTTGATATCCCGGCCATGCATGTTGTGATGAACGGTGGTGATTCTGCTTACGTAGCTTTGCTGCCTTCCGGGTTTGCGATTGTGCCGGATGGGCCAGGGTCACGTGGGCCCCCAACGGCGGCGGCAGCCAACGGGAATAGCGGTGATAATGGAGGCCGTGGTGGCCCGCATAGGGTGGGTGGGTCCCTTCTCACGGTGGCGTTTCAGATCCTTGTGAATAGTCTCCCTACGGCCAAGCTCACGGTAGAATCGGTGGAGACGGTCAACAACCTTATATCGTGCACGGTTCAGAAGATAAAAGCCGCGCTTCAATGTGAAAGCTG 2495 0.5074 MSFGGFLDSNSGGGVARIVADIPYSNGTNNSSSSSNDRMPSSAISQPRLVTPTLAKSMFNSPGLSLALQTNIDGQGEMNRIPENYESIGGRRSREEEHESRSGSDNMEGASGDDQDAADIPPRKKRYHRHTPQQIQELEGLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHENTLLRQENDKLRAENMSIRDAMRNPVCSNCGGPAIIGEISLEEQHLRIENARLKDELDRVCALAGKFLGRPITSLANSIAPPLPNSSLELGVGSNGFGGMSTVATTLPLAPDFGVGISSPLGLVPPAPRPTAGVTGLDRSIERSMFLELALAAMDELVQMAQTGQPLWIRSLEGGREMLNHEEYMRTFTPCIGLKPNGFVSEASRETGMVIINSLALVETLMDSNRWAEMFPCLIARTSTTEVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHADGVWAVVDVSIDTIREPSGAPTFINCRRLPSGCVVQDMPNGYSKVTWVEHAEYDEIQVHQLYRPLLSFGMGFGAQRWVTTLQRQCECLAILMSSTVPSRDHTAINPSGRRSMLKLAQRMTNNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFDFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAMNANQSSMLILQETCIDAAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGPGSRGPPTAAAANGNSGDNGGRGGPHRVGGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALQCES 831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g01822 831 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG1 67 828 - -
Bva02g01822 831 SMART HOX_1 122 185 IPR001356 GO:0003677
Bva02g01822 831 SUPERFAMILY Homeodomain-like 108 181 IPR009057 -
Bva02g01822 831 CDD homeodomain 123 181 IPR001356 GO:0003677
Bva02g01822 831 Gene3D - 401 536 IPR023393 -
Bva02g01822 831 MobiDBLite consensus disorder prediction 755 780 - -
Bva02g01822 831 ProSitePatterns 'Homeobox' domain signature. 156 179 IPR017970 GO:0000981|GO:0006355
Bva02g01822 831 SUPERFAMILY Bet v1-like 586 824 - -
Bva02g01822 831 CDD START_ArGLABRA2_like 329 557 - -
Bva02g01822 831 SUPERFAMILY Bet v1-like 327 558 - -
Bva02g01822 831 MobiDBLite consensus disorder prediction 75 131 - -
Bva02g01822 831 Coils Coil 175 207 - -
Bva02g01822 831 Gene3D - 110 197 - -
Bva02g01822 831 SMART START_1 334 558 IPR002913 GO:0008289
Bva02g01822 831 Pfam Homeodomain 124 179 IPR001356 GO:0003677
Bva02g01822 831 ProSiteProfiles 'Homeobox' domain profile. 121 181 IPR001356 GO:0003677
Bva02g01822 831 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 67 828 IPR042160 -
Bva02g01822 831 Pfam START domain 334 558 IPR002913 GO:0008289
Bva02g01822 831 MobiDBLite consensus disorder prediction 87 104 - -
Bva02g01822 831 ProSiteProfiles START domain profile. 325 561 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva02g01822 Bva-Chr2 20213946 20220046 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva02g01822 1 831 Homeobox Transcription Factor Family AT3G61150 67.539 0.0 1081
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Bva02g01822 START 1.8e-56 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva02g01822 K09338 - tcc:18614208 1425.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva02g01822 02 20213946 20220046 Bva02g01822 02 20213946 20220046 ECH