Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g01814 ATGAGGTCAATCTTCTGCGGGAATCTGGATTTTGATGCGCGCCAGTCTGATGTTGAGAGACTGTTCAGGAGATATGGGAAAGTTGATAGAGTGGATATGAAGTCCGGGTTTGCCTTTGTGTACATGGAAGATGAACGTGATGCTGAGTATGCAATTAGAAGACTTGATAGAACTGAATTTGGTAGAAAGGGGCGTCGATTACGTGTTGAGTGGACCAAGCAAGAACGTGATAGTAGAAGGCCAGGTGATTCAAGGAGATCATCATCTAATACGAGAGCGTCCAAGACATtgtttgtaataaattttgatccaGTTCATACCAGGACAAGGGATCTGGAGAGACACTTTGAACCATACgggaaaatattaaatataaggaTCAGAAGGAATTTTGCCTTTGTTCAGTATGAATCCCAGGAGGATGCTACACGAGCACTGGAGGCTACTAACATGAgCAAGTTTATGGATCGTGATGTCACAGTGGAATATGCAATaagagatgatgatgatagaAGGACTGCATACAGTCCTGATAGAAGAGGTCGTGACATCTCGCCTGATGGGAGATATGGTCGAGGGAGATCCCCAAGTCCATATCGTAGGGGGAGGGGTAGCCCAGACTATGGCCATGGATCAAATCTGGCTTCCCGACCAGAACCAAGAGGAAGTCCCAGGTATGATCGAGCTGAAAGCCCAGTGAATGGGAGATATGACAGTCGTTCACCCCCTCCCCGAGAGAGAGGCATTTCTGGCTTGCAATTTCTTTCAGTAAGGAAGAGAAGTTTGAAGATTAAGCTTCGGGGCTTGTTTCTTTCTCAGTTGCTGACACTTAAAGTGGGAAAAAGAGTTTG 851 0.4313 MRSIFCGNLDFDARQSDVERLFRRYGKVDRVDMKSGFAFVYMEDERDAEYAIRRLDRTEFGRKGRRLRVEWTKQERDSRRPGDSRRSSSNTRASKTLFVINFDPVHTRTRDLERHFEPYGKILNIRIRRNFAFVQYESQEDATRALEATNMSKFMDRDVTVEYAIRDDDDRRTAYSPDRRGRDISPDGRYGRGRSPSPYRRGRGSPDYGHGSNLASRPEPRGSPRYDRAESPVNGRYDSRSPPPRERGISGLQFLSVRKRSLKIKLRGLFLSQLLTLKVGKRV 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g01814 283 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 62 IPR000504 GO:0003723
Bva02g01814 283 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 97 159 IPR000504 GO:0003723
Bva02g01814 283 Gene3D - 1 85 IPR012677 -
Bva02g01814 283 Gene3D - 86 177 IPR012677 -
Bva02g01814 283 MobiDBLite consensus disorder prediction 170 249 - -
Bva02g01814 283 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 95 166 IPR000504 GO:0003723
Bva02g01814 283 SMART rrm1_1 3 70 IPR000504 GO:0003723
Bva02g01814 283 SMART rrm1_1 96 162 IPR000504 GO:0003723
Bva02g01814 283 SUPERFAMILY RNA-binding domain, RBD 2 91 IPR035979 GO:0003676
Bva02g01814 283 SUPERFAMILY RNA-binding domain, RBD 83 171 IPR035979 GO:0003676
Bva02g01814 283 MobiDBLite consensus disorder prediction 170 189 - -
Bva02g01814 283 PANTHER - 4 212 - -
Bva02g01814 283 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 4 212 - -
Bva02g01814 283 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 74 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva02g01814 Bva-Chr2 20168729 20173927 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva02g01814 3 161 Eukaryotic Initiation Factors Gene Family AT4G34110 27.746 3.86e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva02g01814 K12893 - gmx:100797778 426.017
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva02g01814 02 20168729 20173927 Bva02g01814 02 20168729 20173927 ECH