Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g01813 ATGGCAGAAGCTGAAGCTAGCAAACATGCTTCTTCTGCAGCCACAgctgcaaataataatattgttcaATCAACCAAACCCAGCACGAGAAGGTTCATTGGGGTGCGGCAAAGGCCTTCGGGGAGGTGGGTAGCTGAGATCAAAGACTCCTCTCAGCACGTGAGGCTATGGCTTGGAACCTACGACACACCAGAAGAAGCAGCCAGGGCTTATGACGAAGCAGCTCGAGCTCTGCGCGGTGAAAATGCACGAACCAATTTCGCCCCTGCCACGAGCCAGTCAGGGTCAGGTCCTTCCAGTGGGTCCGATGGGAGGCATGGTTTGAGCTTTGCTTCCTTGAAAGCCAGGTTAAGCAAGAACCTACAGAGTATCATGGCGAGGGCAAGTGAGACCAAGTCTTCAAAGAGTAGGGTGAGTGATCATTTCACCTTTGCTAGCATATTTCACCGTAATAGGAGCCTCGGCCACAGCCACGGCCAGTATCGAATCCATGCGGATGCAGCCTCGGATGTGGAGAAAGTGGTGCAGCCTAGCATAATAGTCCCTCCTGTTGATCAAACTACTCCTGCAGAGGCTTCAACTTCTTGTTGGGAAACCTCTAGTAGCCTATCTGATTGTAACTCTGACTGGGTCGGGTTCCAGCAATCCGGATTGGATTCAGACGGGTCGGATGTAGGGGAAGTTGGTGTTGGGGAGCAAGGGTTGTTGGAGCAATTGTTGGGGTGGGTGGATAGTCCCGATCATACTAATTGTGCTGGTGGATTAAGTGAAGAGGGTTCAAGGAGTAAGAGATTTAAGGTGTCTTCTTCTGTGCTTGTGCCTCCAACTTTTAGTAATTACTCTGATCATGAGGCTTGTGGCTCTCCTTATCATCATGCTTGTGGGTCACCATATAGTAGTGCTTATTCTTCTCCATACAACAATAATGGTGGTGGGAATTA 941 0.4899 MAEAEASKHASSAATAANNNIVQSTKPSTRRFIGVRQRPSGRWVAEIKDSSQHVRLWLGTYDTPEEAARAYDEAARALRGENARTNFAPATSQSGSGPSSGSDGRHGLSFASLKARLSKNLQSIMARASETKSSKSRVSDHFTFASIFHRNRSLGHSHGQYRIHADAASDVEKVVQPSIIVPPVDQTTPAEASTSCWETSSSLSDCNSDWVGFQQSGLDSDGSDVGEVGVGEQGLLEQLLGWVDSPDHTNCAGGLSEEGSRSKRFKVSSSVLVPPTFSNYSDHEACGSPYHHACGSPYSSAYSSPYNNNGGGN 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g01813 313 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 258 - -
Bva02g01813 313 SUPERFAMILY DNA-binding domain 32 88 IPR016177 GO:0003677
Bva02g01813 313 MobiDBLite consensus disorder prediction 1 25 - -
Bva02g01813 313 CDD AP2 31 90 IPR001471 GO:0003700|GO:0006355
Bva02g01813 313 MobiDBLite consensus disorder prediction 83 107 - -
Bva02g01813 313 ProSiteProfiles AP2/ERF domain profile. 31 88 IPR001471 GO:0003700|GO:0006355
Bva02g01813 313 Pfam AP2 domain 31 80 IPR001471 GO:0003700|GO:0006355
Bva02g01813 313 MobiDBLite consensus disorder prediction 11 25 - -
Bva02g01813 313 MobiDBLite consensus disorder prediction 85 106 - -
Bva02g01813 313 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 258 - -
Bva02g01813 313 PRINTS Ethylene responsive element binding protein signature 32 43 IPR001471 GO:0003700|GO:0006355
Bva02g01813 313 PRINTS Ethylene responsive element binding protein signature 54 70 IPR001471 GO:0003700|GO:0006355
Bva02g01813 313 SMART rav1_2 31 94 IPR001471 GO:0003700|GO:0006355
Bva02g01813 313 Gene3D AP2/ERF domain 30 89 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva02g01813 Bva-Chr2 20166250 20167191 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva02g01813 23 88 AP2-EREBP Transcription Factor Family AT5G19790 66.667 3.78e-26 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Bva02g01813 AP2 1.1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva02g01813 K09286 - gmx:100799444 295.049