Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g01799 ATGGATATAAAGGCTACGAGAAGAACTGAACGATTCGGTGGGGAAACCTGTGCATATTGGCTTGCTGGGAGGTGCAACAGAAATCCTTGTAGGTTTTTGCACGGAGAAACACCATTACCATATCCTAAATATCATAATGTTGCTGGTACTCATCTCTGTGGGAGGCAGTCCCACTCCTTTAGTAAGAAACCCCCAAGAAATAGTAAGGTTGGAGGAGGTGGGACAAGCACAACCAAGGATAATCAGAAGTCATCAAAAAGTATCTGTAGATACTGGATGAATAGCAATTGTGCACATGGTGATCAGTGCTGGAACTTACATTCGTGGTTTGATGTTGATGGGCTTTCAACATTAGCAAAGCTACAAGAACACAAGAAGGCCATCACTGGAATTACGCTGCCAGTTGGATCAGATAAACTTTATTCTGGCAGTAGTGATGGGACAGTTCGGATGTGGGACTGCAATACGGGTAAATGTGCAAATGTAATAAAACTTGGTGCAGAAGTGGGGTGTTTGATCAGTGAGGGTCCGTGGGTGTTTGTTGGTTTGCCAAATGCTGTTAAGGCTTGGAACATTCAAACAGCTGCTGAGTTTGTTCTTAATGGGCCTCGTGGCCAAGTCTATGCCATGATTGTTGCCAATAATACACTTTTTGCTGGGGCACAGGACGGTATTATTTCTGCATGGAGAGGTAGTTCTGGAACCGACTGCCCTTTTGAATTGGTGGCATCACTAAGTGGCCACACTAGATCCGTGGTTTGTCTAGCTGTTGGAGACAAGATGCTGTTCTCAGGTTCCATGGACCATAGCATAAAGgtCTGGAATGTTGATACACTACAGTGTACGATGACATTGAATGGGCACACTGATGTAGTGACGTCCCTCATTTGTTGGGACCAGTTTTTGCTGTCTTGCTCGTTGGACTGCACTGTGAAGGTTTGGGTTGCCAGTGCCACGGAACAAGGGACTTTGGATGTAACATACACACATAATGAAGAATATGGAGTTCTTGCACTTTGTGGAATGACTGATGCTGATGCGAAGCCGATCTTGTTTTGCTCGTGCAATGACAATGCAGTTCACCTATATGACTTGCCATCCTTTTCTAAGAGGGGTCGATTATTTGCAAAGAAAGATGTTCGATCACTGGAGATAGGTCCCGGAGGGCTCTTCTTCACGGGAGATGGGACTGGTTTGCTAATGGTGTGGAAATGGTTGGCAGAGCCCAAGGTGGCTTCTTCCTG 1244 0.4542 MDIKATRRTERFGGETCAYWLAGRCNRNPCRFLHGETPLPYPKYHNVAGTHLCGRQSHSFSKKPPRNSKVGGGGTSTTKDNQKSSKSICRYWMNSNCAHGDQCWNLHSWFDVDGLSTLAKLQEHKKAITGITLPVGSDKLYSGSSDGTVRMWDCNTGKCANVIKLGAEVGCLISEGPWVFVGLPNAVKAWNIQTAAEFVLNGPRGQVYAMIVANNTLFAGAQDGIISAWRGSSGTDCPFELVASLSGHTRSVVCLAVGDKMLFSGSMDHSIKVWNVDTLQCTMTLNGHTDVVTSLICWDQFLLSCSLDCTVKVWVASATEQGTLDVTYTHNEEYGVLALCGMTDADAKPILFCSCNDNAVHLYDLPSFSKRGRLFAKKDVRSLEIGPGGLFFTGDGTGLLMVWKWLAEPKVASS 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g01799 414 Gene3D - 14 111 - -
Bva02g01799 414 ProSiteProfiles Trp-Asp (WD) repeats profile. 245 284 IPR001680 GO:0005515
Bva02g01799 414 ProSitePatterns Trp-Asp (WD) repeats signature. 262 276 IPR019775 -
Bva02g01799 414 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 48-LIKE ISOFORM X1 10 413 - -
Bva02g01799 414 ProSiteProfiles Zinc finger C3H1-type profile. 11 37 IPR000571 GO:0046872
Bva02g01799 414 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 245 278 - -
Bva02g01799 414 SUPERFAMILY CCCH zinc finger 84 108 IPR036855 GO:0046872
Bva02g01799 414 Gene3D - 112 175 IPR015943 GO:0005515
Bva02g01799 414 SMART c3hfinal6 11 36 IPR000571 GO:0046872
Bva02g01799 414 SMART c3hfinal6 84 109 IPR000571 GO:0046872
Bva02g01799 414 SMART WD40_4 278 315 IPR001680 GO:0005515
Bva02g01799 414 SMART WD40_4 238 275 IPR001680 GO:0005515
Bva02g01799 414 SMART WD40_4 321 364 IPR001680 GO:0005515
Bva02g01799 414 SMART WD40_4 193 230 IPR001680 GO:0005515
Bva02g01799 414 SMART WD40_4 114 153 IPR001680 GO:0005515
Bva02g01799 414 SMART WD40_4 367 404 IPR001680 GO:0005515
Bva02g01799 414 SUPERFAMILY WD40 repeat-like 113 405 IPR036322 GO:0005515
Bva02g01799 414 PRINTS G protein beta WD-40 repeat signature 302 316 IPR020472 -
Bva02g01799 414 PRINTS G protein beta WD-40 repeat signature 140 154 IPR020472 -
Bva02g01799 414 PRINTS G protein beta WD-40 repeat signature 262 276 IPR020472 -
Bva02g01799 414 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 121 153 - -
Bva02g01799 414 PANTHER - 10 413 IPR044715 -
Bva02g01799 414 ProSiteProfiles Zinc finger C3H1-type profile. 83 110 IPR000571 GO:0046872
Bva02g01799 414 ProSiteProfiles Trp-Asp (WD) repeats profile. 121 162 IPR001680 GO:0005515
Bva02g01799 414 Gene3D - 178 413 IPR015943 GO:0005515
Bva02g01799 414 Pfam WD domain, G-beta repeat 280 314 IPR001680 GO:0005515
Bva02g01799 414 Pfam WD domain, G-beta repeat 118 153 IPR001680 GO:0005515
Bva02g01799 414 Pfam WD domain, G-beta repeat 240 275 IPR001680 GO:0005515
Bva02g01799 414 MobiDBLite consensus disorder prediction 55 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva02g01799 Bva-Chr2 20079533 20082863 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva02g01799 109 284 Eukaryotic Initiation Factors Gene Family AT2G46290 25.888 1.30e-08 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Bva02g01799 WD40 0.00068 CL0186