Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g01784 ATGGTGAGAGGGAAGACTCAGATGAGGCGCATAGAGAACGCAACAAGCAGGCAAGTCACCTTCTCCAAGCGGCGCAATGGCCTTCTCAAAAAGGCTTATGAGCTTTCAGTCCTTTGTGATGCTGAGGTAGCCCTCATAATCTTCTCTCCAAGAGGGAAGATGTACGAATTTGCAAGCTCCGgTGTACAGGGCACAATAGAACGCTACCGCAGACATACTAGAGATACTCAAGCAACCAACAAGTCTGTTGAACAAAATATGCAGCATTTGAAGCAAGAAGCAGCAAACATGATGAAGAATATTGAGCAACTCGAAGCAACCAAAAAGAAACTTCTGGGAGAAGGCCTAGGATCATGCACAGTGGAAGAACTCCAACAGATAGAACAACAGTTGGAGAGGAGTGTAATCAGTGTCCGAGCAAGAAAGACTCAGGCGTACAAGGAACAAATTGAACaactaaaagaaaagGAAAAAGCCCTATTAGCTGAAAATGCAAGGCTCTCTGGGAAGTACAAtatgcagcagcagcagcaagaaAATAGGGAAAACCAACCCTACGAAGAAAGTAGTCCAAGTTCAGATGTAATAACTGAATTATTCATTGGATTACCAGAAACGAGAACAAGACGCATGCCTTCTACTTATGCCTA 650 0.4154 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSPRGKMYEFASSGVQGTIERYRRHTRDTQATNKSVEQNMQHLKQEAANMMKNIEQLEATKKKLLGEGLGSCTVEELQQIEQQLERSVISVRARKTQAYKEQIEQLKEKEKALLAENARLSGKYNMQQQQQENRENQPYEESSPSSDVITELFIGLPETRTRRMPSTYA 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g01784 216 PANTHER MADS BOX PROTEIN 1 205 - -
Bva02g01784 216 Coils Coil 121 170 - -
Bva02g01784 216 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bva02g01784 216 MobiDBLite consensus disorder prediction 171 194 - -
Bva02g01784 216 Pfam K-box region 84 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bva02g01784 216 CDD MADS_MEF2_like 3 75 IPR033896 GO:0000977|GO:0045944
Bva02g01784 216 PANTHER MADS-BOX PROTEIN SOC1 1 205 - -
Bva02g01784 216 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bva02g01784 216 Gene3D - 14 107 IPR036879 GO:0003677|GO:0046983
Bva02g01784 216 Coils Coil 73 114 - -
Bva02g01784 216 SUPERFAMILY SRF-like 3 79 IPR036879 GO:0003677|GO:0046983
Bva02g01784 216 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bva02g01784 216 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bva02g01784 216 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bva02g01784 216 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bva02g01784 216 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bva02g01784 216 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva02g01784 Bva-Chr2 19994992 20003220 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva02g01784 1 158 MADS-box Gene Family AT2G45660 77.848 2.81e-89 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Bva02g01784 K-box 5.8e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva02g01784 - - jre:109013897 285.419