Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g01782 ATGGGTCGAGGGAGAGTTGAACTGAAGAGGATAGAGAACAAGATCAACCGCCAGGTTACTTTCTCGAAAAGAAGGAATGGTTTGCTCAAGAAAGCCTATGAACTCTCTGTGTTGTGTGATGCTGAGATTGCCCTTATCATTTTCTCTAGCCGTGGCAAGCTCTATGAATTTGGAAGCTCTGGTATTACGAAAACCCTTGAAAGATACCAGCGCAGCTCCTTCGTTCCACAAGACAACAACGTTGAACGAGAAACTCAGAGCTGGTTCCACGAGGTTTCAAAGCTAAAGGCAAAGTATGAATCTCTTCAACGGACTCAAAGgCATTTGCTCGGGGAAGATCTTGGACCGTTGAATGTGAAAGAGCTAATAAATCTTGAGAAGCAGCTTGAAGGAGCCCTTGCACAAGCCAGGCAAAGGAGGACGCAAATGATGATTGAACAAATGGAAGATCTTCGTAGAAAGGAATGCCACCTTGGAGAGATTAACAAGCAGCTCAGACTCAAGCTTGAATCAGAGGGGTTTAATCCTAAAACCATTGATAGCTTGTGGAGCTCTAGCTCAGCACCTGTAAACACCAGCTTTCTGATGCAGCCTAATTCTCAAACTGACCCCATGGAATGTCAACCGGAACCTAATTTCTTGCAAATAGggTACCATCACTATTACGATCAAGGGGAGCCATCAAGTGTTTCAAAGACCGTGCCTGGAGTCACTGACTTCATGCAAGGATGGGTCCTTTG 740 0.4486 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEIALIIFSSRGKLYEFGSSGITKTLERYQRSSFVPQDNNVERETQSWFHEVSKLKAKYESLQRTQRHLLGEDLGPLNVKELINLEKQLEGALAQARQRRTQMMIEQMEDLRRKECHLGEINKQLRLKLESEGFNPKTIDSLWSSSSAPVNTSFLMQPNSQTDPMECQPEPNFLQIGYHHYYDQGEPSSVSKTVPGVTDFMQGWVL 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g01782 246 SUPERFAMILY SRF-like 2 85 IPR036879 GO:0003677|GO:0046983
Bva02g01782 246 Coils Coil 119 142 - -
Bva02g01782 246 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bva02g01782 246 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bva02g01782 246 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bva02g01782 246 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bva02g01782 246 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bva02g01782 246 CDD MADS_MEF2_like 2 73 IPR033896 GO:0000977|GO:0045944
Bva02g01782 246 PANTHER MADS-BOX TRANSCRIPTION FACTOR 17 1 228 - -
Bva02g01782 246 PANTHER MADS BOX PROTEIN 1 228 - -
Bva02g01782 246 ProSiteProfiles K-box domain profile. 85 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bva02g01782 246 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Bva02g01782 246 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bva02g01782 246 Pfam K-box region 82 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bva02g01782 246 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva02g01782 Bva-Chr2 19985399 19989723 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva02g01782 1 246 MADS-box Gene Family AT2G45650 65.354 6.10e-109 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Bva02g01782 K-box 1.4e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva02g01782 K09264 - tcc:18614251 369.392