Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g01687 ATGGCCACTTGTGCCACCGCTatcctcctcctccttctaTCAGCCACCACCGGCACTGTCTCTTGCCTCCAAGAGAGAGAGTTGCTGCAAATGGCTCAAACCCAGGTTTCAAACGCCAAGACCTGGGTTCAGAACTCTGTGAGACTGCATGGACCAGCTGGACTGAGCCTGAGCCTTTCTGATCAGACTGCTGTGGCTCTGAGAGATTGTGATAAGCTCTACGGGGAGAGTGAGTCTCGGTTAGCTCACATGCTGTCTGAGAAGAGCATTTATGACAGAAACGATGCCGTTGCGTGGATAAGTGGGTTGATGGCAAACCATAGGACCTGTTTGGATGGGTTGGAGGAGAAAGGTTATGTTGAAGCTCAAACTTTGGTAAAGAACTTGACCGTGTTGCTTGGTGAAGCTCTTGCTTTGTACAGTAAGggcaaagataagaaaaaagGACCAGCACAGGGAAAATTTGACAGATCCAATGGTGGGCTTCTAGTGTCATGGAATCCAGGAACTTCCAGAGCAGACTTCACAGTGGCACATGATGGTTCAGGCACCCACAAGACGATCAGAGAAGCAGTGGCTGCTCTGGCTGCAAGGGGCGGCGGCAACAACCCGGAGAGAGCGGTTATCCATGTAAAATCAGGAGTCTGCAATGAGAAAGTGGAGATTGGGAACAAGTTGAAGAATGTGATGTTTGTAGGAGATGGAATAGACAAAACTATTGTCACTGGCAGCAGAAATGTGATTCAGGGTGCCACCACTCTCAGTTCTGCTACATTTGATGTGTCAGGGGATGGGTTTTGGGCAAGGGATATGACATTTGAGAACACAGCAGGTCCTGGCAAGCACCAAGCAGTGGCGCTAAAGGTGAGCTCAGACCTATCAATCTTCTATAGATGCAGCTTCAAAGCCTACCAAGACACTCTCTATGTACATTCAAACCGGCAATTCTACCGGGACTGTCACATATACGGCACCATTGATTTCATATTCGGTGATGCCACAGCGGTGTTCCAAAACTGTGACATTTTCGTGAGGAAACCAATGGATCACCAATCCAACTTAATAACAGCACAAGCCAGAGACGACCAAAATGAACCTACCACCATGGAAAAAATATTCCAGACTGTGTTTCTGAAGACAGACATGGACGGGTTTATTGACCCAAAAGGGTGGAAGGAATGGAGTGGAAGCTTTGCGTTGTCGACTTTGTACTATGCAGAGTATATGAACACCGGGAGTGGTGCTTCGACCAAGAACAGAGTGAACTGGCCTGGTTTTCATGTGCTTCATTCTGCAAATGAAGCTATGCCTTATACAGTGAATGAATGGGAGATAGGTGGATTCCGGCGGCTGGTGTGCCACTTTCGGCTGGAGTGTAACTGGGAAACTAGTTTTAACTTCTA 1403 0.4676 MATCATAILLLLLSATTGTVSCLQERELLQMAQTQVSNAKTWVQNSVRLHGPAGLSLSLSDQTAVALRDCDKLYGESESRLAHMLSEKSIYDRNDAVAWISGLMANHRTCLDGLEEKGYVEAQTLVKNLTVLLGEALALYSKGKDKKKGPAQGKFDRSNGGLLVSWNPGTSRADFTVAHDGSGTHKTIREAVAALAARGGGNNPERAVIHVKSGVCNEKVEIGNKLKNVMFVGDGIDKTIVTGSRNVIQGATTLSSATFDVSGDGFWARDMTFENTAGPGKHQAVALKVSSDLSIFYRCSFKAYQDTLYVHSNRQFYRDCHIYGTIDFIFGDATAVFQNCDIFVRKPMDHQSNLITAQARDDQNEPTTMEKIFQTVFLKTDMDGFIDPKGWKEWSGSFALSTLYYAEYMNTGSGASTKNRVNWPGFHVLHSANEAMPYTVNEWEIGGFRRLVCHFRLECNWETSFNF 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g01687 467 ProSitePatterns Pectinesterase signature 2. 322 331 IPR033131 -
Bva02g01687 467 CDD PMEI-like_4 4 142 - -
Bva02g01687 467 Pfam Pectinesterase 374 443 IPR000070 GO:0030599|GO:0042545
Bva02g01687 467 Pfam Pectinesterase 174 368 IPR000070 GO:0030599|GO:0042545
Bva02g01687 467 SUPERFAMILY Pectin lyase-like 170 447 IPR011050 -
Bva02g01687 467 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 29 140 IPR035513 -
Bva02g01687 467 Pfam Plant invertase/pectin methylesterase inhibitor 29 138 IPR006501 GO:0004857
Bva02g01687 467 Gene3D - 169 447 IPR012334 -
Bva02g01687 467 Gene3D Invertase/pectin methylesterase inhibitor family protein 18 142 IPR035513 -
Bva02g01687 467 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 36-RELATED 371 443 - -
Bva02g01687 467 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 36-RELATED 7 368 - -
Bva02g01687 467 PANTHER PECTINESTERASE 371 443 - -
Bva02g01687 467 PANTHER PECTINESTERASE 7 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva02g01687 Bva-Chr2 19395529 19398915 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva02g01687 8 443 Carbohydrate Esterase AT3G60730 50.913 6.15e-168 481