Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g01639 ATGGAGAAGCACAAGTGCAAGCTCTGCTTCAAGAACTTCTCTAATGGCAGAGCCTTGGGGGGTCACATGAGGTCTCACATGATGAGCCTCCCGGTTCCGCCAAAACCAGAGGAGTCTCCGCCGCATGTTCAGCTGAGCTTCGAGGCGGAGTCAGCTTCGTCTCCGTCGTCGTCTTCATCGGAAGGGGACGATAAGGGTCTCGGGTATGGGCTGAGAGAGAACCCGAAGCGAAGCATTCGCCTGGTAGATCCAGAGTTTTCGTTCGCCGTTGTAGATTCCGGCTCTGTAATTCTTCAAGACGGAGAGAGCGAGACCGAGTCGTCGAAAAACCCGACTCGTAGACGATCCAAACGTGCTTGGAAAACGGGATTTCTAGAGGATCAGTACATCAATCACCACAACCTAATTcgagagaaagagagtttgaaaaagtttaaatctAACAAACCCAATAAGACCGAGTCGTGGGCAGAGCCTGAACCGGTGAGTTCAATCTCTGAAACCACCACCGAAGAAGACGTCGCCGTTTGCCTCATGATGCTTTCGAGGGACAGATGGAAGAGACAAGAACTAAAccgaaaggagaaagaagatgaagaggaagaagaggaagaagaagaagacgacGAGGACGAAGCAGAGAGTGATGAATCAGAGGAGCTGAAATCGTCGAAGATCAGAGTTCGCGGAAGGTATAAATGTGAAACGTGCAAGAAGGTGTTTCGATCTTATCAAGCACTTGGTGGGCACAGAGCTAGTCACAAGAAGATCAAAGTGAATAATAACACAAACAACAGAGTGTACGACCCTGAATTGGAACAGGAAAATGCTGGCACTTCAGCTCCTCCCATGGCGGATAATAAGAAAATCCATGAATGCCCAGTTTGTTTCAGAGTGTTTTCTTCAGGTCAAGCACTTGGTGGGCACAAGAGAACTCATGTTACTGGTCCAGCAACAACTCCACTTCCAACCCCAACCAAGTTCGTAGAATCTCTCATAGATCTTAATCTCCCTGCTCCAATGGATGACGACGACATTAGCCAATTCGAAAACTCTGCAGTTTCAGATGCAGAATTCGTCAACCCCATTAGGCAATG 1097 0.4503 MEKHKCKLCFKNFSNGRALGGHMRSHMMSLPVPPKPEESPPHVQLSFEAESASSPSSSSSEGDDKGLGYGLRENPKRSIRLVDPEFSFAVVDSGSVILQDGESETESSKNPTRRRSKRAWKTGFLEDQYINHHNLIREKESLKKFKSNKPNKTESWAEPEPVSSISETTTEEDVAVCLMMLSRDRWKRQELNRKEKEDEEEEEEEEEDDEDEAESDESEELKSSKIRVRGRYKCETCKKVFRSYQALGGHRASHKKIKVNNNTNNRVYDPELEQENAGTSAPPMADNKKIHECPVCFRVFSSGQALGGHKRTHVTGPATTPLPTPTKFVESLIDLNLPAPMDDDDISQFENSAVSDAEFVNPIRQ 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g01639 365 Pfam C2H2-type zinc finger 4 27 - -
Bva02g01639 365 Pfam C2H2-type zinc finger 231 256 - -
Bva02g01639 365 Pfam C2H2-type zinc finger 291 313 - -
Bva02g01639 365 ProSiteProfiles Zinc finger C2H2 type domain profile. 232 259 IPR013087 -
Bva02g01639 365 MobiDBLite consensus disorder prediction 99 119 - -
Bva02g01639 365 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Bva02g01639 365 MobiDBLite consensus disorder prediction 46 63 - -
Bva02g01639 365 MobiDBLite consensus disorder prediction 154 169 - -
Bva02g01639 365 SMART c2h2final6 232 254 IPR013087 -
Bva02g01639 365 SMART c2h2final6 291 313 IPR013087 -
Bva02g01639 365 SMART c2h2final6 4 26 IPR013087 -
Bva02g01639 365 MobiDBLite consensus disorder prediction 191 225 - -
Bva02g01639 365 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 361 IPR044303 GO:0006355
Bva02g01639 365 MobiDBLite consensus disorder prediction 20 71 - -
Bva02g01639 365 MobiDBLite consensus disorder prediction 146 169 - -
Bva02g01639 365 Gene3D Classic Zinc Finger 229 313 - -
Bva02g01639 365 ProSiteProfiles Zinc finger C2H2 type domain profile. 291 313 IPR013087 -
Bva02g01639 365 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
Bva02g01639 365 SUPERFAMILY beta-beta-alpha zinc fingers 3 29 IPR036236 -
Bva02g01639 365 ProSitePatterns Zinc finger C2H2 type domain signature. 234 254 IPR013087 -
Bva02g01639 365 MobiDBLite consensus disorder prediction 196 217 - -
Bva02g01639 365 SUPERFAMILY beta-beta-alpha zinc fingers 231 313 IPR036236 -
Bva02g01639 365 Coils Coil 186 219 - -
Bva02g01639 365 ProSitePatterns Zinc finger C2H2 type domain signature. 293 313 IPR013087 -
Bva02g01639 365 PANTHER CYS2/HIS2 ZINC-FINGER TRANSCRIPTION FACTOR 1 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva02g01639 Bva-Chr2 19104891 19106279 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva02g01639 1 347 C2H2 Transcription Factor Family AT3G60580 44.507 2.72e-70 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bva02g01639 zf-C2H2_6 8.8e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva02g01639 - - zju:107424180 420.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva02g01639 02 19104891 19106279 Bva02g01639 02 19104891 19106279 ECH
Bva02g01639 02 19104891 19106279 Bva01g00722 01 5264098 5265440 ECH