Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g01636 ATGGCTCTTACTCTTCAACATTTGTTCTTACATTTACTCTCTCTTGTAGCTttgttttcaatatttctaGTGACCACATCCTCTTGCTCCAACCCCAGAAAGCTTCTCAATTCTTCATACTCCCCATCTGATTCAGATTGGTCACCGGCAGAGGCCACTTGGTATGGAAGCCCCGATGGAGCCGGAAGTGATGGGGGTGCTTGTGGATATGGCAATGCTGTCGAGCAGCCTCCATTCTCTTCAATGATATCAGCTGGAAGCCCTTCATTATATGAGTCAGGCAAAGGATGTGGTTCTTGTTATGAGgTGAAGTGTACTGGGAATACGGCATGCTCCGGCAACCCCGTGCATGTGGTCATCACCGACGAGTGTCCTGATTGTAGTTCAGCAGACAAagttcattttgatttgagtGGCACTGCTTTTGGTGCCATGGCAGTTTCAGGTCAAGCTGAGCAGCTACGCAATGCTGGGAAATTGGACATTCAACACAGAAGGGTTGAATGCAACTACCCTGGTATGTCAATAGCCTTTCATGTGGACGCTGGCTCCAACCCTAATTATTTTGCTTCGCTAATTGAATATGAGGATGGGGATGGTGACCTTGCCAAAGTTGAGCTCAAACAAGCCCTTGACTCGGACTCATGGCTTTCCATGCAACAATCTTGGGGTGCAGTTTGGAAACTTGACACAGGATCACCACTAAAAGCTCCGTTCTCTCTCCGGCTAACGACACTGGAGTCTGGCAAGACCGTTGTGGCAAACAACGTTATCCCCGCCGGGTGGATACCGGGCCACACTTACCGTTCGGTTgtgaattttta 824 0.4672 MALTLQHLFLHLLSLVALFSIFLVTTSSCSNPRKLLNSSYSPSDSDWSPAEATWYGSPDGAGSDGGACGYGNAVEQPPFSSMISAGSPSLYESGKGCGSCYEVKCTGNTACSGNPVHVVITDECPDCSSADKVHFDLSGTAFGAMAVSGQAEQLRNAGKLDIQHRRVECNYPGMSIAFHVDAGSNPNYFASLIEYEDGDGDLAKVELKQALDSDSWLSMQQSWGAVWKLDTGSPLKAPFSLRLTTLESGKTVVANNVIPAGWIPGHTYRSVVNF 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g01636 274 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 187 270 IPR007117 -
Bva02g01636 274 PANTHER EXPANSIN-B3 13 274 - -
Bva02g01636 274 Pfam Lytic transglycolase 84 162 IPR009009 -
Bva02g01636 274 Gene3D - 33 170 IPR036908 -
Bva02g01636 274 PRINTS Major pollen allergen Lol pI signature 146 161 IPR005795 GO:0005576|GO:0019953
Bva02g01636 274 PRINTS Major pollen allergen Lol pI signature 178 193 IPR005795 GO:0005576|GO:0019953
Bva02g01636 274 PRINTS Major pollen allergen Lol pI signature 194 209 IPR005795 GO:0005576|GO:0019953
Bva02g01636 274 PRINTS Major pollen allergen Lol pI signature 85 96 IPR005795 GO:0005576|GO:0019953
Bva02g01636 274 PRINTS Major pollen allergen Lol pI signature 105 115 IPR005795 GO:0005576|GO:0019953
Bva02g01636 274 PRINTS Major pollen allergen Lol pI signature 225 242 IPR005795 GO:0005576|GO:0019953
Bva02g01636 274 SMART dpbb_1 83 164 IPR007112 -
Bva02g01636 274 PRINTS Expansin/Lol pI family signature 216 230 IPR007118 GO:0005576
Bva02g01636 274 PRINTS Expansin/Lol pI family signature 256 270 IPR007118 GO:0005576
Bva02g01636 274 PRINTS Expansin/Lol pI family signature 46 61 IPR007118 GO:0005576
Bva02g01636 274 PRINTS Expansin/Lol pI family signature 64 82 IPR007118 GO:0005576
Bva02g01636 274 PRINTS Expansin/Lol pI family signature 87 105 IPR007118 GO:0005576
Bva02g01636 274 PRINTS Expansin/Lol pI family signature 157 173 IPR007118 GO:0005576
Bva02g01636 274 PANTHER EXPANSIN-B2-RELATED 13 274 - -
Bva02g01636 274 Gene3D - 171 274 IPR036749 -
Bva02g01636 274 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 65 174 IPR007112 -
Bva02g01636 274 Pfam Expansin C-terminal domain 176 259 IPR007117 -
Bva02g01636 274 SUPERFAMILY Barwin-like endoglucanases 39 173 IPR036908 -
Bva02g01636 274 SUPERFAMILY PHL pollen allergen 176 270 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva02g01636 Bva-Chr2 19090010 19091328 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva02g01636 1 274 Expansin Gene Family AT1G65680 62.409 5.63e-126 357
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva02g01636 - - gmx:548090 424.091
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva02g01636 02 19090010 19091328 Bva02g01636 02 19090010 19091328 ECH