Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g01628 ATGGACATGTACGGGTCACTTTCTACCACAGACTGCTTCCGCATTGATGACCTTCTCGATTTCTCCAACGACGACCCCGCAGCCGCAGCCACCCCCTCCTGCTCTTCCTCCACCGGGTCCTACCACTACAACCACCACCTTCCTCCGCCACACTACCCATTTACCCAGTATAACCAATACTCACAATCACAGCCCGTGTTTGAGAATTTCCCTCGCGTCCCCTCCTCCACCGACTTCACAACCGGGCTCTGCGTCCCTAGTGATGACGCAGCCGAGCTTGAATGGCTGTCCCGGTTCGTGGACGACAGCTTCCACGAATTCCCGGTGAATGTGACACTCGGCCTCGCTGGTCTCCAATCCGACACGTCGTTTCCTAGCAAAGCTCGCAGCAAACGCTCGAGAGCGCCAGTTTCTTCCCCGTCAAAAGAGCAAAACGGAGGGGTGCGCAGATGCACCCATTGCGCATCAGAGAAAACACCGCAATGGCGGACGGGACCACTGGGACCGAAGACGCTATGCAACGCGTGCGGCGTGAGGTACAAATCGGGTCGACTCGTACCCGAATACCGACCCGCAGCAAGCCCGACTTTCGTATTGACTCAGCACTCGAACTCGCACCGGAAAGTCATGGAGCTCCGTCGCCAGAAAGAGCTTATGta 659 0.5721 MDMYGSLSTTDCFRIDDLLDFSNDDPAAAATPSCSSSTGSYHYNHHLPPPHYPFTQYNQYSQSQPVFENFPRVPSSTDFTTGLCVPSDDAAELEWLSRFVDDSFHEFPVNVTLGLAGLQSDTSFPSKARSKRSRAPVSSPSKEQNGGVRRCTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTQHSNSHRKVMELRRQKELM 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g01628 219 Pfam GATA zinc finger 151 184 IPR000679 GO:0006355|GO:0043565
Bva02g01628 219 ProSiteProfiles GATA-type zinc finger domain profile. 149 181 IPR000679 GO:0006355|GO:0043565
Bva02g01628 219 MobiDBLite consensus disorder prediction 120 153 - -
Bva02g01628 219 Gene3D - 141 216 IPR013088 GO:0006355|GO:0008270
Bva02g01628 219 PANTHER GATA TRANSCRIPTION FACTOR 2 1 141 - -
Bva02g01628 219 PANTHER GATA TRANSCRIPTION FACTOR 2 141 218 - -
Bva02g01628 219 CDD ZnF_GATA 150 197 IPR000679 GO:0006355|GO:0043565
Bva02g01628 219 MobiDBLite consensus disorder prediction 132 146 - -
Bva02g01628 219 PANTHER GATA TRANSCRIPTION FACTOR 1 141 - -
Bva02g01628 219 PANTHER GATA TRANSCRIPTION FACTOR 141 218 - -
Bva02g01628 219 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 149 209 - -
Bva02g01628 219 SMART GATA_3 145 195 IPR000679 GO:0006355|GO:0043565
Bva02g01628 219 PIRSF Txn_fac_GATA_plant 137 219 IPR016679 GO:0003677|GO:0005634|GO:0045893
Bva02g01628 219 PIRSF Txn_fac_GATA_plant 1 146 IPR016679 GO:0003677|GO:0005634|GO:0045893
Bva02g01628 219 ProSitePatterns GATA-type zinc finger domain. 151 176 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva02g01628 Bva-Chr2 19005334 19006329 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva02g01628 73 219 C2C2-Gata Transcription Factor Family AT2G45050 59.278 3.62e-70 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Bva02g01628 GATA 1.3e-15 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva02g01628 02 19005334 19006329 Bva02g01628 02 19005334 19006329 ECH