Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g01624 atggATTTTGTAGGGAGCATGTTCTGTCTTAGCAACGGTAATAGAGAGCAAAATGGTAACAGTAACAATGTTAATTTTGCTTGGGATTCATGGGAACCAGCTACTTCGGTTAATTCAAGGCTCATTAATGCGTTCTACACTGCCAACGCTTCAGCTGCGGAGAGCACCGGCGCCGCCACTCGCCAGGAGGCGAGTCTAGCAAATGCACTCATGTTCCTTCCTCGAGCTAATCATGACGACGGTGCTCACCaccaacaacaacagcagcagcaggcACTGTACTCCGCGGCAGATGGGTCCCACGTGCACCCGGACCCGCATCTCACGTGCTTGAAGCTTGGGAAGAGGCATTATTTTGAGGACGCTAATGCCCCTTCCTTGGGTAGTGGTGGTGGGTTCCCTTTGGCgggaaagagagggaaaggTTATAATGGAAGAGGTGGCGGCGGCGGCACTGTAAAAGCGGCGTCGTTTGCCACTGCGGCTGTACCGAGATGTCAGGTAGAGGGATGCCACGTGGCGCTGTTGAACGCGAAGGACTACCACCGGAGGCACAAAGTTTGTGAGATGCATTCCAAGGCACCCAAAGTTGTGGTGTTAGGGTTGGAGCAGAGGTTCTGCCAGCAGTGTAGCAGGTTCCATGTGGTTTCAGAATTCGATGACTCAAAGAGGAGTTGCAGGAGGAGACTGGCAGGACACAATAAGCGAAGAAGAAAGAGCTCCCTTGATTCTGTTGCTAGGAATCCTTCTCAAGCAGGGTGTGCTCGCTCTCTTCTGTCATCAAAGAATGATTCTTGGCTCTCCCCTGCTGATCTATCCTCAAGATGCAGTGCTGCACTTCGCGAACTGATAGCAGAAAACCGCGCAGCCATCATGGCTCGGCAGCTCATCTCAGACAGAGACTGGCATTCACACCACAATGCAGTGGAAGACCTCAAGGAGATCCAGCACGAGTACAATTATTTTCCGCAACAGCAGCACATGTTTCCCTA 992 0.495 MDFVGSMFCLSNGNREQNGNSNNVNFAWDSWEPATSVNSRLINAFYTANASAAESTGAATRQEASLANALMFLPRANHDDGAHHQQQQQQQALYSAADGSHVHPDPHLTCLKLGKRHYFEDANAPSLGSGGGFPLAGKRGKGYNGRGGGGGTVKAASFATAAVPRCQVEGCHVALLNAKDYHRRHKVCEMHSKAPKVVVLGLEQRFCQQCSRFHVVSEFDDSKRSCRRRLAGHNKRRRKSSLDSVARNPSQAGCARSLLSSKNDSWLSPADLSSRCSAALRELIAENRAAIMARQLISDRDWHSHHNAVEDLKEIQHEYNYFPQQQHMFP 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g01624 330 Gene3D - 157 227 IPR036893 GO:0003677|GO:0005634
Bva02g01624 330 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 20 328 IPR044817 GO:0003677
Bva02g01624 330 MobiDBLite consensus disorder prediction 230 249 - -
Bva02g01624 330 ProSiteProfiles Zinc finger SBP-type profile. 163 240 IPR004333 GO:0003677
Bva02g01624 330 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 7 20 328 - -
Bva02g01624 330 SUPERFAMILY SBT domain 164 245 IPR036893 GO:0003677|GO:0005634
Bva02g01624 330 Pfam SBP domain 166 239 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva02g01624 Bva-Chr2 18956460 18958789 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva02g01624 110 239 SBP-box Gene Family AT1G27370 51.449 2.77e-37 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Bva02g01624 SBP 1.9e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva02g01624 - - gmx:100806582 429.098