Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g01623 ATGTTGGACTATGAATGGGGGAACCCATCCAATATAATGCTCACAGGAAACGAAGATGCGGGggcggcggccgccgccgcagcAGCAGCTCAAGACTCCGACCAAAGCCACCGGCAAATCTTCGAACACTATCCTTCCCATGCCTTATTACCCGACCACCTTCTTTCCAACCAACAACACGGCCACACGCCCAACAGTGCCACCGCAGATTTCTCTCAACAACACCACCACCAGTTTAACCACGAAtcccaccaccaccaccaacaCCAACACCATCATATTCAACACTCGTTCTTCGATCCACGCGCCTTCCCCGGCGCGTCGGCGCACTTCCCCGCTCCACCGCCGCCTGTTCTCTCCCTTGACCCTCTTCCGAGCGTCAACTATGGGCCTGGGCTTTTGGTCGTTCCGAAATCCGAGGATGTCGGTCGGCCCATGGACTTCTCGGCATCCAGAATTGGACTGAACTTGGGTGGCCGTACATATTTCTCGTCAGAGGATGACTTCGTTAGCCGACTCTACCGGCGGTCCAGACCGGCTGAACCGGGAACGACATCGTCTAACTCCCCCAGGTGCCAAGCCGAGGGCTGCAATGCCGATCTCTCCCATGCCAAGCACTACCACCGTCGCCACAAGGTTTGCGAGTTTCACTCCAAAGCTGCCACCGTCATCGCCGCCGGGTTGACTCAGCGGTTCTGCCAGCAGTGTAGCAGGTTTCATCTTCTTACGGAGTTTGATAATGGGAAGCGTAGCTGCAGGAAGAGACTAGCCGATCACAACCGTCGCCGACGAAAAACCCAGCAGCCAACTCAAGAAATTCAGAAACCTAATATGGAAAATGCCCGAAATTCTAATTTGGAAAATGTATCAAGGTCCCCGCCGGACTCGAGGGCTCCGTTATCGTCTTCGGTGACTGTGGCGGTCTCACCCCCGGATTATTTCCGGCAAACGCCATATCAGAGCACAAGCTCTTCAACAACATCAAGCTCACTGTTTTTCTGTAGTGGGTA 1010 0.5188 MLDYEWGNPSNIMLTGNEDAGAAAAAAAAAQDSDQSHRQIFEHYPSHALLPDHLLSNQQHGHTPNSATADFSQQHHHQFNHESHHHHQHQHHHIQHSFFDPRAFPGASAHFPAPPPPVLSLDPLPSVNYGPGLLVVPKSEDVGRPMDFSASRIGLNLGGRTYFSSEDDFVSRLYRRSRPAEPGTTSSNSPRCQAEGCNADLSHAKHYHRRHKVCEFHSKAATVIAAGLTQRFCQQCSRFHLLTEFDNGKRSCRKRLADHNRRRRKTQQPTQEIQKPNMENARNSNLENVSRSPPDSRAPLSSSVTVAVSPPDYFRQTPYQSTSSSTTSSSLFFCSG 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g01623 336 MobiDBLite consensus disorder prediction 270 336 - -
Bva02g01623 336 ProSiteProfiles Zinc finger SBP-type profile. 189 266 IPR004333 GO:0003677
Bva02g01623 336 MobiDBLite consensus disorder prediction 257 336 - -
Bva02g01623 336 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 8 73 322 - -
Bva02g01623 336 MobiDBLite consensus disorder prediction 79 93 - -
Bva02g01623 336 Gene3D - 183 253 IPR036893 GO:0003677|GO:0005634
Bva02g01623 336 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 73 322 IPR044817 GO:0003677
Bva02g01623 336 Pfam SBP domain 192 265 IPR004333 GO:0003677
Bva02g01623 336 SUPERFAMILY SBT domain 190 270 IPR036893 GO:0003677|GO:0005634
Bva02g01623 336 MobiDBLite consensus disorder prediction 76 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva02g01623 Bva-Chr2 18944912 18947650 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva02g01623 1 239 SBP-box Gene Family AT1G02065 46.947 5.04e-56 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Bva02g01623 SBP 1.3e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva02g01623 - - gmx:100802206 431.409
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva02g01623 02 18944912 18947650 Bva02g01623 02 18944912 18947650 ECH