Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g01606 ATGGGGAGCATGTCTGAACCAGATAGAAAACGGCGTCACTTTAGCTCCTTGTCTCCTACTGCAGCAGCTGCTACTGCTAAGAAGCTACCCTTCTTGCCCGTATCTGAAGACAAAAAGCTTGATATTGCTGTGCTTCAGTTTCAGAATCAAAAGCTTACACAGAAATTAGAAACTCAGAAGGTGGAACATACTGCTCTTGAGAATAAATTTTCTCAACTGAAGGAGAAGCAACAGTCGTATGATTCCACATCAACATTGGCCAAGAAGTCTTGGGAACAGCTGGTCAATGATTTGGAGTTATGTTCTATTGGCACAAGAGAGTCTTGCAGCAAATTGGATTCCAAGTTTACATCAGTCACAGGAGGTTGTAGTCCATCTTCTGTTGAGGATGTTTTTCTTAGCCGACTTCTGCAAACTGGTGCAACTGAAAGTTCCTCAACATTTAATTGTGCTGATCAGATGGGAGACCATAGAGCAAGTACTACTGAAAAAGCTAAGagcattataaataatatagtgACAGCTATCAACAATCTTTGGTTTGTGAAGGATGGTTTGCATGCTACAGTACTAGAGAACCTTCCAGATGATGGTTCATGCAGGCAGGAATCCACCGTTGGTTTGCtgacaaaagttaaaaacttgAGATCTGCATTCAGTGAACTTCATTTGAAGCACAAATCCTTGATGAGTGAGTTTCAAAGTCATAGAGATCTTGATGACAAAAACAAAGTTGAgcttaaaagattaaaagGGGAATTGGAAAGCACTGTAGCAGAATTAGAAGAAAGCAATACTAAATTGGCAACCCTTAAGGCGGAGAGAGATGCGGCAAAAGGGGGAATTTTCCCAATCTTAAATGTTGGAAACAAGCATATTTCTAGTGATAAGATCGGAGACAAGCAAAAGGATTTGCAGGACTTGGAGTCTTCCCTGAAAGAGCTAATGGACCAGGGTATGTCTCGACTAGGAGAGCTGAAAAGACTTCATGaggaaagaataagaatattacAGCAGTTATGCGACTTACAGAACACtctgaagaatttgaaatgtatTGTCTCTTCTGAATCATTCAAATTGGTGAGAGATCAAATAGAGAAGTCAAAATCTGAAGTTCTCGAGTATCAGGCCTCATTTGAGAAACTACAGGTTGAGAAGGATATCCTTTCATGGAAGGAAAGGGATTTGTACATGAAAAGTGATATAGTAGATGTTGTTCAAAGATCTGCAGCAATTGTGGATTCTAGAGCAGCTGATTTAAGGATtaaaattcagaaaacaaTTGAGGAAAGAAATGACATTGAAAAGAGGTTGGAAGAGGCAGCAAGAGAACCAGGAAGGAAACAAGTCATTGCTGAATTTAAATCCCTGGTGTCTTCATTTCCTGAGGAAATGGGATCTATGCAAAGTCAGTTAAGCAAGTACAAAGAGGCAGCTTCGGATATCCATTCTCTGCGTGCAGATGTGCAGTCTCTTTCTACTATTCTTGATAGAAAGgTAAAAGAATGTGACATGTCTGCTGTCAGATCTGCTGATCAGGCTGCTGAGATACAGAGGCTGAATGCTATGGTCCAAGTTTTGAGAGAAAGTGAGGAAgagttgaaattaattttggaaatGTATAGACGCGAATCCATCGATTCAAGGGATGTTGCTGAAGCACGGGATTCAGAATACAGAGCATGGGCCCGTGTTCAAAGTTTGAAATGTTCCCTTGATGAGCACAATTTGGAACTTAGAGTTAAAACAGCAAATGAAGCAGAGGCTAGATCTCAACAGAGGCTGGCTGCTGCTGAAGCTGAGATAGCTGATCTGAGACAGAAATTAGAAGCTTCTAAAAGGGAGAAGTGTAAATTGTCTGATggtttaaaatcaaaaaatgaagaaaatgaggcCTATCTATCTGAAATAGAGaCTATTGGACAAGCATATGATGATATGCAAAATCAGAACCAACAATTGTTGCAGCAGATTACGGAGGGAGATGACTACAATATCAAGCTTGTCTTAGAGGGTGTTAGGGCGAGACAGAAGCAGGATTCCTTGCTCATGGAGAAGAAGGTCATAGAACGAGAGATCCAGCAACAAAATGcatctctaaatttttatgacATGAAAGCTGCAAGAGTTGAAGATCAGGTGAAATTCTGTTCAGATCAGATTCAGAGAATTGCGGAGGATAAGTTTAATAGTTCTGTCACTTTGGAAAATACACAAAAAAGGTTACTGGATGTGCGAAGGGCATCTGAACAAGCCAGAAAGACACTGGAAGAAGCACAATCTAGAGTTGGTAGTAGTCGAGTAACTCGTATGGAGTTACAAGTAGAAGTTGAGAAAGAAAGGTTTgctaagaaaagaatagaggaGCAGCTGGAGGTTGCCAGGAGAAAGGTTTCATCTCTTCGGGCAAAGACTGAGGGCTCCTCGGTTACTCAAAAGCTTCGTCAGGAACTGCGTGAATACAGGGAAATTATTAAGTGCAGTATCTGTCAGGACAGGACAAAAGAGGTGGTAATCACAAAATGCTACCATTTGTTTTGCTACCCTTGCATCCAGAAAGCAATGGAGAATAGGCACCGCAAGTGTCCACAGTGTTCTGCAAGCTTTGGGCCTAACGATGTTAAGCCTGTTTATCTGGTTCAGTG 2648 0.3867 MGSMSEPDRKRRHFSSLSPTAAAATAKKLPFLPVSEDKKLDIAVLQFQNQKLTQKLETQKVEHTALENKFSQLKEKQQSYDSTSTLAKKSWEQLVNDLELCSIGTRESCSKLDSKFTSVTGGCSPSSVEDVFLSRLLQTGATESSSTFNCADQMGDHRASTTEKAKSIINNIVTAINNLWFVKDGLHATVLENLPDDGSCRQESTVGLLTKVKNLRSAFSELHLKHKSLMSEFQSHRDLDDKNKVELKRLKGELESTVAELEESNTKLATLKAERDAAKGGIFPILNVGNKHISSDKIGDKQKDLQDLESSLKELMDQGMSRLGELKRLHEERIRILQQLCDLQNTLKNLKCIVSSESFKLVRDQIEKSKSEVLEYQASFEKLQVEKDILSWKERDLYMKSDIVDVVQRSAAIVDSRAADLRIKIQKTIEERNDIEKRLEEAAREPGRKQVIAEFKSLVSSFPEEMGSMQSQLSKYKEAASDIHSLRADVQSLSTILDRKVKECDMSAVRSADQAAEIQRLNAMVQVLRESEEELKLILEMYRRESIDSRDVAEARDSEYRAWARVQSLKCSLDEHNLELRVKTANEAEARSQQRLAAAEAEIADLRQKLEASKREKCKLSDGLKSKNEENEAYLSEIETIGQAYDDMQNQNQQLLQQITEGDDYNIKLVLEGVRARQKQDSLLMEKKVIEREIQQQNASLNFYDMKAARVEDQVKFCSDQIQRIAEDKFNSSVTLENTQKRLLDVRRASEQARKTLEEAQSRVGSSRVTRMELQVEVEKERFAKKRIEEQLEVARRKVSSLRAKTEGSSVTQKLRQELREYREIIKCSICQDRTKEVVITKCYHLFCYPCIQKAMENRHRKCPQCSASFGPNDVKPVYLVQ 882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g01606 882 Coils Coil 736 763 - -
Bva02g01606 882 ProSitePatterns Zinc finger RING-type signature. 843 852 IPR017907 -
Bva02g01606 882 Coils Coil 771 805 - -
Bva02g01606 882 Coils Coil 582 616 - -
Bva02g01606 882 MobiDBLite consensus disorder prediction 1 15 - -
Bva02g01606 882 ProSiteProfiles Zinc finger RING-type profile. 828 867 IPR001841 -
Bva02g01606 882 Coils Coil 418 445 - -
Bva02g01606 882 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 809 881 IPR013083 -
Bva02g01606 882 Coils Coil 525 545 - -
Bva02g01606 882 PANTHER RING FINGER PROTEIN-RELATED 1 880 IPR013956 GO:0004842|GO:0010390
Bva02g01606 882 Coils Coil 42 76 - -
Bva02g01606 882 Coils Coil 366 386 - -
Bva02g01606 882 SMART ring_2 828 866 IPR001841 -
Bva02g01606 882 Coils Coil 298 318 - -
Bva02g01606 882 CDD RING-HC_BRE1_like 826 867 - -
Bva02g01606 882 Coils Coil 638 658 - -
Bva02g01606 882 Coils Coil 244 274 - -
Bva02g01606 882 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BRE1-LIKE 1 1 880 - -
Bva02g01606 882 SUPERFAMILY RING/U-box 821 880 - -
Bva02g01606 882 MobiDBLite consensus disorder prediction 1 22 - -
Bva02g01606 882 Pfam Zinc finger, C3HC4 type (RING finger) 827 866 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva02g01606 Bva-Chr2 18845846 18855544 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva02g01606 825 879 C3H Transcription Factor Family AT3G58030 35.714 3.69e-08 55.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva02g01606 02 18845846 18855544 Bva02g01606 02 18845846 18855544 ECH