Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g01564 ATGGCTAATACCCCTGATTCCGATTTCTCTCTTTTCGACTCTCTTCAACACTACCTCCTTGAAGTTGATTCTGATACTTTGAAGGAAAGTCCACTCTCAAACATTTCTGATTCTCCATTATACCCTCAGGATTCCAGCATTGACGATAACCTCTCCTTTCCATCACACTTGAGCTTTTCCCCTCCAATGGCTAATAGCCACGATGACGACGTTAACATCGCAGTTACGTGCATTAATCAAGCAGAAGGGAAGGTGTTGGCCGCTGATAAGGAAGTTGCTGCGGCAGCGGGTAAGTCTCACGCGCCACCAAAATGGAAGCGTTACCGAGGCGTGAGGCGGAGACCGTGGGGGAGGTTTGCGGCGGAGATCAGAGATCCGAAGAAGAACGGCCACAGGATATGGCTTGGGACGTACGAAACGGAGGAGCATGCAGCTCTGGCTTACGACAGAGCGGCTTTCAAGATGCGTGGCAGGAAAGCCAAGCTGAATTTCCCGCACCTCATAGGGTCGGATGCGGCTCCGGAGCCGGCTAGGGTTAAGGGCTCGAAGCGCAAGACTGCGGAGACAACCTTGGACTCATCATCGCCATCCATGAATGAAGATGATGGTTCGGAAGGGGTAATAAAgtcaaagaaaaggaagaatttgGCTGGTTTACTCAACAAACTAGCCAGTAACAGAAGACAAATGGGTTTCATGGGAAATGTTGATCAATGGTTGAATAACTTGAATTATTGTATAGTTTCCATGATAGAACAATTAGATCGAGGAGCAAATCCTTTATTTGTAAaccaattaagaaaaattaatta 812 0.4569 MANTPDSDFSLFDSLQHYLLEVDSDTLKESPLSNISDSPLYPQDSSIDDNLSFPSHLSFSPPMANSHDDDVNIAVTCINQAEGKVLAADKEVAAAAGKSHAPPKWKRYRGVRRRPWGRFAAEIRDPKKNGHRIWLGTYETEEHAALAYDRAAFKMRGRKAKLNFPHLIGSDAAPEPARVKGSKRKTAETTLDSSSPSMNEDDGSEGVIKSKKRKNLAGLLNKLASNRRQMGFMGNVDQWLNNLNYCIVSMIEQLDRGANPLFVNQLRKIN 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g01564 270 SUPERFAMILY DNA-binding domain 107 166 IPR016177 GO:0003677
Bva02g01564 270 ProSiteProfiles AP2/ERF domain profile. 107 165 IPR001471 GO:0003700|GO:0006355
Bva02g01564 270 Pfam AP2 domain 107 157 IPR001471 GO:0003700|GO:0006355
Bva02g01564 270 PRINTS Ethylene responsive element binding protein signature 108 119 IPR001471 GO:0003700|GO:0006355
Bva02g01564 270 PRINTS Ethylene responsive element binding protein signature 147 167 IPR001471 GO:0003700|GO:0006355
Bva02g01564 270 SMART rav1_2 107 171 IPR001471 GO:0003700|GO:0006355
Bva02g01564 270 PANTHER AP2-DOMAIN DNA-BINDING PROTEIN 2 228 - -
Bva02g01564 270 Gene3D AP2/ERF domain 106 166 IPR036955 GO:0003700|GO:0006355
Bva02g01564 270 MobiDBLite consensus disorder prediction 171 208 - -
Bva02g01564 270 PANTHER DNA-BINDING DOMAIN 2 228 IPR044808 GO:0003700|GO:0009873
Bva02g01564 270 CDD AP2 106 167 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva02g01564 Bva-Chr2 18565320 18566132 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva02g01564 89 192 AP2-EREBP Transcription Factor Family AT2G44840 63.810 4.44e-39 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Bva02g01564 AP2 4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva02g01564 K09286 - gmx:100527194 186.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva02g01564 02 18565320 18566132 Bva01g00646 01 4753208 4753855 BWGD
Bva02g01564 02 18565320 18566132 Bva02g01564 02 18565320 18566132 ECH